Top 10 genes with highest correlation to Rv2516c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1512/epiA | (cc=0.6223) | info on Rv1512/epiA |
| Rv1908c/katG | (cc=0.5588) | info on Rv1908c/katG |
| Rv2224c/caeA | (cc=0.5513) | info on Rv2224c/caeA |
| Rv1701/- | (cc=0.5484) | info on Rv1701/- |
| Rv3025c/iscS | (cc=0.5438) | info on Rv3025c/iscS |
| Rv2373c/dnaJ2 | (cc=0.5198) | info on Rv2373c/dnaJ2 |
| Rv3715c/recR | (cc=0.519) | info on Rv3715c/recR |
| Rv2594c/ruvC | (cc=0.518) | info on Rv2594c/ruvC |
| Rv0007/- | (cc=0.5076) | info on Rv0007/- |
| Rv2869c/rip | (cc=0.4977) | info on Rv2869c/rip |
Correlation of Rv2516c/- with Rv1908c/katG
Normalized LFCs for Rv2516c/-:
(description and provenance of datasets)
| Rv2516c/- | Rv1908c/katG | |
| Fe_supp_jason_reseq | 0.991 | 2.303 |
| low_pH_jason_reseq | 0.0 | -0.44 |
| NO_jason_reseq | -0.362 | -0.69 |
| B6_jason_reseq | -0.153 | -0.292 |
| MHCII_jason_reseq | 0.0 | -0.257 |
| Isoniazid02 | -0.551 | 0.0 |
| Rifampicin4 | -2.708 | 0.0 |
| Ethambutol3 | -0.851 | 0.0 |
| Meropenem3 | -1.336 | 0.0 |
| Vancomycin16 | -0.639 | 0.0 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.92 | -1.722 |
| hypoxia_3wks | -1.132 | -0.977 |
| hypoxia_6wks | -1.167 | -2.714 |
| glycerol | 0.0 | 0.0 |
| cholesterol | -0.145 | 0.0 |
| AJ | -0.232 | 0.0 |
| Bibs02 | -0.183 | 0.0 |
| Bibs02c | -0.209 | 0.0 |
| BL6 | -0.125 | 0.238 |
| BL6a | -0.198 | 0.544 |
| BXD01 | -0.13 | 0.248 |
| BXD010 | 0.323 | 0.0 |
| BXD011 | -0.127 | 0.854 |
| BXD03 | -0.135 | 0.0 |
| BXD04 | -0.124 | 0.34 |
| BXD05 | 0.235 | 0.661 |
| BXD06 | -0.133 | 0.469 |
| BXD07 | -0.138 | 0.0 |
| BXD08 | -0.133 | 0.365 |
| BXD09 | -0.14 | 0.69 |
| CAST | -0.23 | 0.0 |
| CCcont | 2.595 | 3.165 |
| DS01 | 0.0 | 0.0 |
| DS02 | -0.217 | 0.0 |
| DS04 | -0.194 | 0.953 |
| DS0c | -0.217 | 0.0 |
| GP01 | -0.099 | 0.0 |
| GP02 | -0.083 | 0.0 |
| GP0c | -0.13 | 0.0 |
| NOD | -0.225 | 0.0 |
| NZO | -0.199 | 0.0 |
| PWK | -0.196 | 0.0 |
| H37Rv_KO_CtpC | -0.162 | 0.446 |
| H37Rv_KO_CtpD | -0.127 | 0.703 |
| H37Rv_KO_Rv1272 | -0.141 | 0.141 |
| H37Rv_KO_SugABC | -0.099 | 0.42 |
| H37Rv_KO_MbtN | -0.103 | 2.414 |
| Trans05 | -0.131 | 0.359 |
| macrophage_unactivated | -1.146 | 0.0 |
| IL1 | -0.685 | 0.0 |
| Rapamycin | -0.709 | 0.0 |
| Tcell | -1.906 | 0.0 |
| GMCSF | 0.0 | 0.0 |
| IFNab | 0.741 | 0.417 |
| IFNg | 0.275 | 0.0 |
| IFNg_GMCSF1 | -0.726 | 0.0 |
| Rv1432_day32 | 0.0 | -0.494 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | 0.504 | 0.67 |
| delta_Rv3594 | 0.895 | 0.907 |
| delta_Rv3717 | 0.736 | 0.784 |
| delta_Rv3811 | 1.328 | 0.812 |
| delta_Rv0954 | 1.541 | 0.842 |
| PonA1 | -0.56 | -0.419 |
| EccD1_KO | -2.611 | -4.969 |
| EspI_KO | -1.748 | -4.743 |
| PE35_KO | -0.898 | 1.374 |
| PPE68_KO | -0.771 | 0.275 |
| glycerol2 | -1.113 | -3.698 |
| lignocerate | -0.746 | -2.548 |
| oleate | -1.955 | -3.077 |
| phosphatidylcholine | -0.859 | -3.546 |
| acetate | 0.422 | 0.253 |
| glucAc | 0.526 | -0.375 |
| Rv0950ko | 0.669 | -1.212 |
| Rv1096ko | 2.075 | -1.493 |
| Rv3684ko | 0.498 | -0.298 |
| delta_otsA_trehalose | 0.254 | 0.153 |