TnSeqCorr

Top 10 genes with highest correlation to Rv2452c/-:

update plotcorrelationlink to info on gene
Rv3166c/- (cc=0.6893) info on Rv3166c/-
Rv0844c/narL (cc=0.6128) info on Rv0844c/narL
Rv2428/ahpC (cc=0.6021) info on Rv2428/ahpC
Rv1831/- (cc=0.5922) info on Rv1831/-
Rv2775/- (cc=0.5921) info on Rv2775/-
Rv1116/- (cc=0.5897) info on Rv1116/-
Rv1505c/- (cc=0.5865) info on Rv1505c/-
Rv1498c/- (cc=0.584) info on Rv1498c/-
Rv2816c/- (cc=0.5817) info on Rv2816c/-
Rv1517/- (cc=0.5731) info on Rv1517/-

Correlation of Rv2452c/- with Rv2816c/-

Normalized LFCs for Rv2452c/-:
(description and provenance of datasets)
Rv2452c/-Rv2816c/-
Fe_supp_jason_reseq

0.96

1.156

low_pH_jason_reseq

-0.964

-0.803

NO_jason_reseq

-1.313

-0.221

B6_jason_reseq

-0.583

0.577

MHCII_jason_reseq

-0.223

0.527

Isoniazid02

-0.036

-0.563

Rifampicin4

-1.719

-0.902

Ethambutol3

0.01

1.025

Meropenem3

-0.561

0.365

Vancomycin16

-0.738

0.111

Rv2680_day32

0.925

2.122

H37Rv_KO_MarP

-0.621

-0.559

hypoxia_3wks

0.0

0.215

hypoxia_6wks

-1.741

-0.088

glycerol

0.0

0.464

cholesterol

0.879

-0.782

AJ

0.336

0.698

Bibs02

-0.923

0.624

Bibs02c

-0.841

-1.634

BL6

1.436

1.525

BL6a

1.722

1.416

BXD01

0.958

1.344

BXD010

0.495

0.437

BXD011

1.58

1.224

BXD03

1.511

1.836

BXD04

1.075

1.171

BXD05

1.515

1.46

BXD06

0.742

1.244

BXD07

1.6

1.259

BXD08

1.268

1.209

BXD09

1.494

1.309

CAST

0.1

-0.13

CCcont

1.612

1.162

DS01

-0.277

0.506

DS02

-2.059

0.079

DS04

-0.485

-0.306

DS0c

-0.872

0.985

GP01

1.026

0.053

GP02

1.277

0.64

GP0c

1.216

0.427

NOD

2.039

3.461

NZO

-1.582

1.172

PWK

-1.294

-0.149

H37Rv_KO_CtpC

1.687

0.885

H37Rv_KO_CtpD

0.874

-0.807

H37Rv_KO_Rv1272

1.052

0.983

H37Rv_KO_SugABC

0.637

2.137

H37Rv_KO_MbtN

-0.071

0.492

Trans05

1.058

1.366

macrophage_unactivated

0.126

-0.142

IL1

-0.249

-0.273

Rapamycin

0.776

-0.786

Tcell

-0.033

-0.111

GMCSF

0.576

0.058

IFNab

0.181

-0.898

IFNg

-0.056

-0.12

IFNg_GMCSF1

-0.368

-1.291

Rv1432_day32

-0.894

0.0

Rv1565c_day32

0.515

-0.6

secA2_input

-0.094

-2.336

delta_Rv3594

-0.561

-0.575

delta_Rv3717

-1.451

-0.703

delta_Rv3811

-1.28

-0.802

delta_Rv0954

-1.194

-1.176

PonA1

-2.221

-0.913

EccD1_KO

0.918

-0.066

EspI_KO

1.098

0.422

PE35_KO

0.715

0.823

PPE68_KO

0.854

1.389

glycerol2

-0.158

0.684

lignocerate

-0.312

0.367

oleate

-1.089

0.213

phosphatidylcholine

-0.048

0.538

acetate

-0.494

0.638

glucAc

-0.694

0.369

Rv0950ko

-0.407

-0.172

Rv1096ko

-1.36

-0.425

Rv3684ko

0.105

-0.036

delta_otsA_trehalose

-1.24

-0.409