Top 10 genes with highest correlation to Rv2422/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2315c/- | (cc=0.5184) | info on Rv2315c/- |
| Rv3084/lipR | (cc=0.5165) | info on Rv3084/lipR |
| Rv2125/- | (cc=0.4934) | info on Rv2125/- |
| Rv2133c/- | (cc=0.4547) | info on Rv2133c/- |
| Rv0203/- | (cc=0.4488) | info on Rv0203/- |
| Rv0150c/- | (cc=0.4415) | info on Rv0150c/- |
| Rv2831/echA16 | (cc=0.4221) | info on Rv2831/echA16 |
| Rv0392c/ndhA | (cc=0.4218) | info on Rv0392c/ndhA |
| Rv2344c/dgt | (cc=0.4215) | info on Rv2344c/dgt |
| Rv3015c/- | (cc=0.4196) | info on Rv3015c/- |
Correlation of Rv2422/- with Rv3084/lipR
Normalized LFCs for Rv2422/-:
(description and provenance of datasets)
| Rv2422/- | Rv3084/lipR | |
| Fe_supp_jason_reseq | 0.583 | -1.059 |
| low_pH_jason_reseq | 0.637 | -0.559 |
| NO_jason_reseq | -0.559 | -0.722 |
| B6_jason_reseq | -2.466 | -0.831 |
| MHCII_jason_reseq | -0.047 | -0.876 |
| Isoniazid02 | 0.482 | -0.794 |
| Rifampicin4 | -1.646 | 0.07 |
| Ethambutol3 | -0.711 | -0.447 |
| Meropenem3 | 3.001 | -1.448 |
| Vancomycin16 | -0.39 | -0.324 |
| Rv2680_day32 | 1.617 | 0.591 |
| H37Rv_KO_MarP | 0.389 | 0.089 |
| hypoxia_3wks | 0.901 | -0.782 |
| hypoxia_6wks | 0.879 | -1.361 |
| glycerol | 1.087 | 0.082 |
| cholesterol | 3.385 | 0.957 |
| AJ | 0.128 | 0.649 |
| Bibs02 | -2.917 | -0.595 |
| Bibs02c | -2.763 | -0.834 |
| BL6 | -2.133 | -1.424 |
| BL6a | -0.783 | -1.184 |
| BXD01 | -0.726 | -1.956 |
| BXD010 | -0.347 | -0.57 |
| BXD011 | -1.249 | -0.65 |
| BXD03 | -1.537 | -0.277 |
| BXD04 | -0.449 | -1.569 |
| BXD05 | 0.089 | -0.162 |
| BXD06 | -1.763 | -1.561 |
| BXD07 | -0.315 | -1.453 |
| BXD08 | -1.512 | -1.396 |
| BXD09 | -1.338 | -1.155 |
| CAST | -1.238 | -1.175 |
| CCcont | -1.151 | -1.525 |
| DS01 | 1.14 | 0.024 |
| DS02 | 1.096 | 0.929 |
| DS04 | 0.654 | 1.019 |
| DS0c | 0.968 | 0.044 |
| GP01 | 0.765 | 1.391 |
| GP02 | -0.133 | -0.577 |
| GP0c | 0.889 | 0.754 |
| NOD | 0.584 | 0.61 |
| NZO | -1.23 | 0.04 |
| PWK | -2.166 | 0.564 |
| H37Rv_KO_CtpC | 0.574 | -0.068 |
| H37Rv_KO_CtpD | -1.242 | -0.152 |
| H37Rv_KO_Rv1272 | 0.29 | 0.394 |
| H37Rv_KO_SugABC | -1.03 | -1.729 |
| H37Rv_KO_MbtN | -1.493 | -0.998 |
| Trans05 | 0.114 | 0.355 |
| macrophage_unactivated | 0.767 | -0.559 |
| IL1 | 1.424 | 0.418 |
| Rapamycin | 1.335 | 0.221 |
| Tcell | 0.955 | -1.313 |
| GMCSF | -0.108 | 0.792 |
| IFNab | 1.536 | 0.375 |
| IFNg | 0.16 | -0.585 |
| IFNg_GMCSF1 | 0.54 | 0.283 |
| Rv1432_day32 | -0.18 | -0.42 |
| Rv1565c_day32 | 0.771 | -0.622 |
| secA2_input | -0.571 | -0.65 |
| delta_Rv3594 | 0.895 | 0.76 |
| delta_Rv3717 | 1.353 | 1.149 |
| delta_Rv3811 | 2.305 | 1.508 |
| delta_Rv0954 | 2.335 | 0.333 |
| PonA1 | 1.453 | 0.982 |
| EccD1_KO | 0.132 | 1.223 |
| EspI_KO | -0.576 | -0.2 |
| PE35_KO | 1.132 | 0.379 |
| PPE68_KO | 0.374 | -0.339 |
| glycerol2 | -2.465 | -1.453 |
| lignocerate | -2.012 | -0.928 |
| oleate | -1.283 | -1.266 |
| phosphatidylcholine | -2.464 | -1.452 |
| acetate | -1.127 | -0.062 |
| glucAc | -2.001 | -0.392 |
| Rv0950ko | -0.504 | -0.112 |
| Rv1096ko | 0.923 | 0.95 |
| Rv3684ko | 0.17 | -0.511 |
| delta_otsA_trehalose | -0.298 | -0.583 |