Top 10 genes with highest correlation to Rv2422/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2315c/- | (cc=0.5184) | info on Rv2315c/- |
| Rv3084/lipR | (cc=0.5165) | info on Rv3084/lipR |
| Rv2125/- | (cc=0.4934) | info on Rv2125/- |
| Rv2133c/- | (cc=0.4547) | info on Rv2133c/- |
| Rv0203/- | (cc=0.4488) | info on Rv0203/- |
| Rv0150c/- | (cc=0.4415) | info on Rv0150c/- |
| Rv2831/echA16 | (cc=0.4221) | info on Rv2831/echA16 |
| Rv0392c/ndhA | (cc=0.4218) | info on Rv0392c/ndhA |
| Rv2344c/dgt | (cc=0.4215) | info on Rv2344c/dgt |
| Rv3015c/- | (cc=0.4196) | info on Rv3015c/- |
Correlation of Rv2422/- with Rv2133c/-
Normalized LFCs for Rv2422/-:
(description and provenance of datasets)
| Rv2422/- | Rv2133c/- | |
| Fe_supp_jason_reseq | 0.583 | 0.641 |
| low_pH_jason_reseq | 0.637 | 0.07 |
| NO_jason_reseq | -0.559 | 0.711 |
| B6_jason_reseq | -2.466 | -0.506 |
| MHCII_jason_reseq | -0.047 | -0.042 |
| Isoniazid02 | 0.482 | -0.141 |
| Rifampicin4 | -1.646 | -1.378 |
| Ethambutol3 | -0.711 | -1.172 |
| Meropenem3 | 3.001 | -0.535 |
| Vancomycin16 | -0.39 | -0.846 |
| Rv2680_day32 | 1.617 | -0.131 |
| H37Rv_KO_MarP | 0.389 | -0.37 |
| hypoxia_3wks | 0.901 | 0.522 |
| hypoxia_6wks | 0.879 | 0.651 |
| glycerol | 1.087 | 0.215 |
| cholesterol | 3.385 | -0.342 |
| AJ | 0.128 | -0.145 |
| Bibs02 | -2.917 | -0.864 |
| Bibs02c | -2.763 | 0.158 |
| BL6 | -2.133 | -0.783 |
| BL6a | -0.783 | 0.132 |
| BXD01 | -0.726 | -0.48 |
| BXD010 | -0.347 | -0.374 |
| BXD011 | -1.249 | -0.163 |
| BXD03 | -1.537 | -0.784 |
| BXD04 | -0.449 | 0.156 |
| BXD05 | 0.089 | -0.16 |
| BXD06 | -1.763 | -0.686 |
| BXD07 | -0.315 | -0.761 |
| BXD08 | -1.512 | 0.04 |
| BXD09 | -1.338 | -0.752 |
| CAST | -1.238 | -1.119 |
| CCcont | -1.151 | -0.207 |
| DS01 | 1.14 | 0.395 |
| DS02 | 1.096 | -0.145 |
| DS04 | 0.654 | 0.074 |
| DS0c | 0.968 | -0.525 |
| GP01 | 0.765 | 1.267 |
| GP02 | -0.133 | 0.28 |
| GP0c | 0.889 | -0.011 |
| NOD | 0.584 | -0.311 |
| NZO | -1.23 | -0.451 |
| PWK | -2.166 | -0.665 |
| H37Rv_KO_CtpC | 0.574 | -0.493 |
| H37Rv_KO_CtpD | -1.242 | -1.266 |
| H37Rv_KO_Rv1272 | 0.29 | 0.065 |
| H37Rv_KO_SugABC | -1.03 | -0.108 |
| H37Rv_KO_MbtN | -1.493 | -0.022 |
| Trans05 | 0.114 | 0.91 |
| macrophage_unactivated | 0.767 | 0.764 |
| IL1 | 1.424 | 0.985 |
| Rapamycin | 1.335 | 0.491 |
| Tcell | 0.955 | 0.267 |
| GMCSF | -0.108 | -0.045 |
| IFNab | 1.536 | 0.127 |
| IFNg | 0.16 | 0.045 |
| IFNg_GMCSF1 | 0.54 | 1.31 |
| Rv1432_day32 | -0.18 | -0.278 |
| Rv1565c_day32 | 0.771 | -0.112 |
| secA2_input | -0.571 | -0.972 |
| delta_Rv3594 | 0.895 | 1.361 |
| delta_Rv3717 | 1.353 | 1.433 |
| delta_Rv3811 | 2.305 | 1.474 |
| delta_Rv0954 | 2.335 | 0.968 |
| PonA1 | 1.453 | 0.01 |
| EccD1_KO | 0.132 | 0.799 |
| EspI_KO | -0.576 | 0.371 |
| PE35_KO | 1.132 | 0.379 |
| PPE68_KO | 0.374 | -0.793 |
| glycerol2 | -2.465 | -0.126 |
| lignocerate | -2.012 | 0.0 |
| oleate | -1.283 | -0.326 |
| phosphatidylcholine | -2.464 | 0.085 |
| acetate | -1.127 | -0.482 |
| glucAc | -2.001 | -0.405 |
| Rv0950ko | -0.504 | 0.021 |
| Rv1096ko | 0.923 | -0.676 |
| Rv3684ko | 0.17 | -0.138 |
| delta_otsA_trehalose | -0.298 | 0.454 |