Top 10 genes with highest correlation to Rv2422/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2315c/- | (cc=0.5184) | info on Rv2315c/- |
| Rv3084/lipR | (cc=0.5165) | info on Rv3084/lipR |
| Rv2125/- | (cc=0.4934) | info on Rv2125/- |
| Rv2133c/- | (cc=0.4547) | info on Rv2133c/- |
| Rv0203/- | (cc=0.4488) | info on Rv0203/- |
| Rv0150c/- | (cc=0.4415) | info on Rv0150c/- |
| Rv2831/echA16 | (cc=0.4221) | info on Rv2831/echA16 |
| Rv0392c/ndhA | (cc=0.4218) | info on Rv0392c/ndhA |
| Rv2344c/dgt | (cc=0.4215) | info on Rv2344c/dgt |
| Rv3015c/- | (cc=0.4196) | info on Rv3015c/- |
Correlation of Rv2422/- with Rv2831/echA16
Normalized LFCs for Rv2422/-:
(description and provenance of datasets)
| Rv2422/- | Rv2831/echA16 | |
| Fe_supp_jason_reseq | 0.583 | -0.256 |
| low_pH_jason_reseq | 0.637 | 0.639 |
| NO_jason_reseq | -0.559 | -0.116 |
| B6_jason_reseq | -2.466 | 1.588 |
| MHCII_jason_reseq | -0.047 | 1.883 |
| Isoniazid02 | 0.482 | 2.51 |
| Rifampicin4 | -1.646 | 0.601 |
| Ethambutol3 | -0.711 | 2.881 |
| Meropenem3 | 3.001 | 0.048 |
| Vancomycin16 | -0.39 | 0.499 |
| Rv2680_day32 | 1.617 | -3.534 |
| H37Rv_KO_MarP | 0.389 | -0.086 |
| hypoxia_3wks | 0.901 | 0.861 |
| hypoxia_6wks | 0.879 | 0.489 |
| glycerol | 1.087 | 0.205 |
| cholesterol | 3.385 | 1.595 |
| AJ | 0.128 | 0.145 |
| Bibs02 | -2.917 | 0.54 |
| Bibs02c | -2.763 | -0.527 |
| BL6 | -2.133 | -1.548 |
| BL6a | -0.783 | -0.756 |
| BXD01 | -0.726 | -1.326 |
| BXD010 | -0.347 | -1.676 |
| BXD011 | -1.249 | 0.027 |
| BXD03 | -1.537 | -1.77 |
| BXD04 | -0.449 | -1.259 |
| BXD05 | 0.089 | -0.812 |
| BXD06 | -1.763 | -1.436 |
| BXD07 | -0.315 | -0.809 |
| BXD08 | -1.512 | -0.549 |
| BXD09 | -1.338 | -1.143 |
| CAST | -1.238 | -1.39 |
| CCcont | -1.151 | -1.479 |
| DS01 | 1.14 | 0.541 |
| DS02 | 1.096 | 0.859 |
| DS04 | 0.654 | 1.427 |
| DS0c | 0.968 | 0.046 |
| GP01 | 0.765 | 0.531 |
| GP02 | -0.133 | -1.576 |
| GP0c | 0.889 | -0.381 |
| NOD | 0.584 | -0.724 |
| NZO | -1.23 | -1.623 |
| PWK | -2.166 | 0.432 |
| H37Rv_KO_CtpC | 0.574 | -1.522 |
| H37Rv_KO_CtpD | -1.242 | 0.573 |
| H37Rv_KO_Rv1272 | 0.29 | -0.773 |
| H37Rv_KO_SugABC | -1.03 | -1.335 |
| H37Rv_KO_MbtN | -1.493 | -1.826 |
| Trans05 | 0.114 | -2.563 |
| macrophage_unactivated | 0.767 | -0.347 |
| IL1 | 1.424 | 1.385 |
| Rapamycin | 1.335 | 0.064 |
| Tcell | 0.955 | 0.821 |
| GMCSF | -0.108 | -0.055 |
| IFNab | 1.536 | 0.653 |
| IFNg | 0.16 | 0.673 |
| IFNg_GMCSF1 | 0.54 | 0.503 |
| Rv1432_day32 | -0.18 | -0.322 |
| Rv1565c_day32 | 0.771 | 0.924 |
| secA2_input | -0.571 | 0.0 |
| delta_Rv3594 | 0.895 | 1.825 |
| delta_Rv3717 | 1.353 | 1.538 |
| delta_Rv3811 | 2.305 | 2.066 |
| delta_Rv0954 | 2.335 | 2.374 |
| PonA1 | 1.453 | 3.382 |
| EccD1_KO | 0.132 | -1.184 |
| EspI_KO | -0.576 | -0.054 |
| PE35_KO | 1.132 | 0.055 |
| PPE68_KO | 0.374 | -1.389 |
| glycerol2 | -2.465 | -1.345 |
| lignocerate | -2.012 | -1.729 |
| oleate | -1.283 | -0.519 |
| phosphatidylcholine | -2.464 | -1.62 |
| acetate | -1.127 | -2.613 |
| glucAc | -2.001 | -1.71 |
| Rv0950ko | -0.504 | -1.152 |
| Rv1096ko | 0.923 | 0.232 |
| Rv3684ko | 0.17 | -0.848 |
| delta_otsA_trehalose | -0.298 | -0.106 |