Top 10 genes with highest correlation to Rv2306B/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1123c/bpoB | (cc=0.6083) | info on Rv1123c/bpoB |
| Rv1208/gpgS | (cc=0.5958) | info on Rv1208/gpgS |
| Rv1255c/- | (cc=0.5803) | info on Rv1255c/- |
| Rv2130c/mshC | (cc=0.5716) | info on Rv2130c/mshC |
| Rv0084/hycD | (cc=0.5535) | info on Rv0084/hycD |
| Rv3032/- | (cc=0.5338) | info on Rv3032/- |
| Rv1270c/lprA | (cc=0.5333) | info on Rv1270c/lprA |
| Rv2980/- | (cc=0.5206) | info on Rv2980/- |
| Rv3130c/tgs1 | (cc=0.4949) | info on Rv3130c/tgs1 |
| Rv1250/- | (cc=0.4925) | info on Rv1250/- |
Correlation of Rv2306B/- with Rv1270c/lprA
Normalized LFCs for Rv2306B/-:
(description and provenance of datasets)
| Rv2306B/- | Rv1270c/lprA | |
| Fe_supp_jason_reseq | 1.468 | 0.775 |
| low_pH_jason_reseq | -0.656 | 0.288 |
| NO_jason_reseq | 0.344 | 1.888 |
| B6_jason_reseq | 1.389 | 0.939 |
| MHCII_jason_reseq | 0.455 | 1.177 |
| Isoniazid02 | 0.604 | 0.108 |
| Rifampicin4 | 0.699 | -0.103 |
| Ethambutol3 | 0.226 | 0.482 |
| Meropenem3 | 0.131 | -0.297 |
| Vancomycin16 | 1.318 | 0.196 |
| Rv2680_day32 | 0.267 | -1.569 |
| H37Rv_KO_MarP | 0.023 | 0.945 |
| hypoxia_3wks | 0.638 | -0.148 |
| hypoxia_6wks | 1.28 | -0.077 |
| glycerol | -0.554 | -0.164 |
| cholesterol | -0.643 | 0.305 |
| AJ | 0.091 | -0.018 |
| Bibs02 | -1.763 | 0.315 |
| Bibs02c | 0.499 | 0.809 |
| BL6 | -0.53 | 0.524 |
| BL6a | -0.613 | 0.164 |
| BXD01 | -0.978 | -0.244 |
| BXD010 | -1.821 | -1.959 |
| BXD011 | -1.145 | -0.389 |
| BXD03 | -0.395 | -0.254 |
| BXD04 | -0.683 | -0.1 |
| BXD05 | -2.755 | -2.153 |
| BXD06 | -0.737 | -0.737 |
| BXD07 | -0.332 | -0.94 |
| BXD08 | -0.796 | -0.617 |
| BXD09 | -0.29 | -1.132 |
| CAST | -0.127 | 0.988 |
| CCcont | -0.021 | -1.334 |
| DS01 | 0.686 | 0.327 |
| DS02 | -0.246 | -0.555 |
| DS04 | -0.566 | -0.077 |
| DS0c | 0.841 | 0.132 |
| GP01 | -1.931 | -1.865 |
| GP02 | -1.275 | -2.029 |
| GP0c | -1.254 | -0.788 |
| NOD | -1.045 | -0.089 |
| NZO | -1.611 | -0.079 |
| PWK | 0.053 | 0.672 |
| H37Rv_KO_CtpC | -1.623 | -0.773 |
| H37Rv_KO_CtpD | -2.477 | -0.666 |
| H37Rv_KO_Rv1272 | -2.246 | -1.642 |
| H37Rv_KO_SugABC | 1.092 | -0.064 |
| H37Rv_KO_MbtN | -0.641 | -1.224 |
| Trans05 | -0.813 | -2.468 |
| macrophage_unactivated | 2.301 | 1.184 |
| IL1 | -1.308 | -0.347 |
| Rapamycin | -0.626 | -0.921 |
| Tcell | -1.111 | 0.215 |
| GMCSF | -1.595 | -0.441 |
| IFNab | -0.484 | -0.583 |
| IFNg | 1.211 | -0.446 |
| IFNg_GMCSF1 | 0.233 | -1.119 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 0.716 | -0.482 |
| secA2_input | -0.235 | 0.772 |
| delta_Rv3594 | -1.037 | -1.016 |
| delta_Rv3717 | -0.96 | -0.703 |
| delta_Rv3811 | -0.947 | -0.617 |
| delta_Rv0954 | -2.222 | 0.19 |
| PonA1 | -4.022 | -1.506 |
| EccD1_KO | 3.111 | 0.786 |
| EspI_KO | 2.618 | 0.0 |
| PE35_KO | 4.623 | 0.767 |
| PPE68_KO | 5.238 | 1.488 |
| glycerol2 | -1.003 | -0.028 |
| lignocerate | 0.972 | 0.425 |
| oleate | -1.509 | 0.474 |
| phosphatidylcholine | 0.0 | 0.595 |
| acetate | 2.803 | 0.033 |
| glucAc | 1.681 | 0.099 |
| Rv0950ko | -0.407 | 0.268 |
| Rv1096ko | -0.48 | 1.252 |
| Rv3684ko | 2.256 | 0.291 |
| delta_otsA_trehalose | 0.739 | 1.215 |