Top 10 genes with highest correlation to Rv2306B/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1123c/bpoB | (cc=0.6083) | info on Rv1123c/bpoB |
| Rv1208/gpgS | (cc=0.5958) | info on Rv1208/gpgS |
| Rv1255c/- | (cc=0.5803) | info on Rv1255c/- |
| Rv2130c/mshC | (cc=0.5716) | info on Rv2130c/mshC |
| Rv0084/hycD | (cc=0.5535) | info on Rv0084/hycD |
| Rv3032/- | (cc=0.5338) | info on Rv3032/- |
| Rv1270c/lprA | (cc=0.5333) | info on Rv1270c/lprA |
| Rv2980/- | (cc=0.5206) | info on Rv2980/- |
| Rv3130c/tgs1 | (cc=0.4949) | info on Rv3130c/tgs1 |
| Rv1250/- | (cc=0.4925) | info on Rv1250/- |
Correlation of Rv2306B/- with Rv1123c/bpoB
Normalized LFCs for Rv2306B/-:
(description and provenance of datasets)
| Rv2306B/- | Rv1123c/bpoB | |
| Fe_supp_jason_reseq | 1.468 | 0.897 |
| low_pH_jason_reseq | -0.656 | -0.882 |
| NO_jason_reseq | 0.344 | 0.42 |
| B6_jason_reseq | 1.389 | 1.537 |
| MHCII_jason_reseq | 0.455 | 1.134 |
| Isoniazid02 | 0.604 | 1.686 |
| Rifampicin4 | 0.699 | -0.596 |
| Ethambutol3 | 0.226 | 1.143 |
| Meropenem3 | 0.131 | -0.108 |
| Vancomycin16 | 1.318 | 0.403 |
| Rv2680_day32 | 0.267 | -0.496 |
| H37Rv_KO_MarP | 0.023 | 0.051 |
| hypoxia_3wks | 0.638 | -0.307 |
| hypoxia_6wks | 1.28 | -0.355 |
| glycerol | -0.554 | -0.481 |
| cholesterol | -0.643 | -0.697 |
| AJ | 0.091 | -0.452 |
| Bibs02 | -1.763 | 1.013 |
| Bibs02c | 0.499 | 0.062 |
| BL6 | -0.53 | -0.306 |
| BL6a | -0.613 | -0.446 |
| BXD01 | -0.978 | -0.176 |
| BXD010 | -1.821 | -0.265 |
| BXD011 | -1.145 | -0.129 |
| BXD03 | -0.395 | -0.506 |
| BXD04 | -0.683 | -0.445 |
| BXD05 | -2.755 | -1.228 |
| BXD06 | -0.737 | -1.009 |
| BXD07 | -0.332 | -0.499 |
| BXD08 | -0.796 | 0.218 |
| BXD09 | -0.29 | -0.734 |
| CAST | -0.127 | -0.352 |
| CCcont | -0.021 | -1.258 |
| DS01 | 0.686 | -0.024 |
| DS02 | -0.246 | -1.136 |
| DS04 | -0.566 | -1.2 |
| DS0c | 0.841 | -0.517 |
| GP01 | -1.931 | -0.507 |
| GP02 | -1.275 | -0.664 |
| GP0c | -1.254 | -1.526 |
| NOD | -1.045 | 0.464 |
| NZO | -1.611 | -0.328 |
| PWK | 0.053 | -0.102 |
| H37Rv_KO_CtpC | -1.623 | -1.35 |
| H37Rv_KO_CtpD | -2.477 | -0.302 |
| H37Rv_KO_Rv1272 | -2.246 | -0.448 |
| H37Rv_KO_SugABC | 1.092 | 0.318 |
| H37Rv_KO_MbtN | -0.641 | 0.368 |
| Trans05 | -0.813 | -1.554 |
| macrophage_unactivated | 2.301 | 0.518 |
| IL1 | -1.308 | 0.03 |
| Rapamycin | -0.626 | 0.531 |
| Tcell | -1.111 | 0.384 |
| GMCSF | -1.595 | 0.211 |
| IFNab | -0.484 | -0.094 |
| IFNg | 1.211 | 0.134 |
| IFNg_GMCSF1 | 0.233 | 1.351 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 0.716 | 1.829 |
| secA2_input | -0.235 | 0.828 |
| delta_Rv3594 | -1.037 | -1.215 |
| delta_Rv3717 | -0.96 | -0.871 |
| delta_Rv3811 | -0.947 | -0.803 |
| delta_Rv0954 | -2.222 | -1.225 |
| PonA1 | -4.022 | -1.35 |
| EccD1_KO | 3.111 | 1.184 |
| EspI_KO | 2.618 | 0.465 |
| PE35_KO | 4.623 | 2.345 |
| PPE68_KO | 5.238 | 2.572 |
| glycerol2 | -1.003 | -1.621 |
| lignocerate | 0.972 | -0.533 |
| oleate | -1.509 | -0.647 |
| phosphatidylcholine | 0.0 | -0.563 |
| acetate | 2.803 | 0.066 |
| glucAc | 1.681 | -0.654 |
| Rv0950ko | -0.407 | -0.482 |
| Rv1096ko | -0.48 | -0.329 |
| Rv3684ko | 2.256 | 0.403 |
| delta_otsA_trehalose | 0.739 | -0.257 |