Top 10 genes with highest correlation to Rv2297/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2989/- | (cc=0.5306) | info on Rv2989/- |
| Rv3079c/- | (cc=0.4974) | info on Rv3079c/- |
| Rv3057c/- | (cc=0.4895) | info on Rv3057c/- |
| Rv1106c/- | (cc=0.4855) | info on Rv1106c/- |
| Rv1939/- | (cc=0.4853) | info on Rv1939/- |
| Rv2652c/- | (cc=0.4813) | info on Rv2652c/- |
| Rv1706c/PPE23 | (cc=0.4626) | info on Rv1706c/PPE23 |
| Rv2604c/snoP | (cc=0.4617) | info on Rv2604c/snoP |
| Rv2087/- | (cc=0.4601) | info on Rv2087/- |
| Rv2620c/- | (cc=0.4467) | info on Rv2620c/- |
Correlation of Rv2297/- with Rv3079c/-
Normalized LFCs for Rv2297/-:
(description and provenance of datasets)
| Rv2297/- | Rv3079c/- | |
| Fe_supp_jason_reseq | 0.725 | 0.715 |
| low_pH_jason_reseq | 0.164 | 0.089 |
| NO_jason_reseq | -0.788 | -0.234 |
| B6_jason_reseq | 0.049 | 0.403 |
| MHCII_jason_reseq | -0.773 | -0.193 |
| Isoniazid02 | 0.255 | 0.391 |
| Rifampicin4 | 0.328 | 0.382 |
| Ethambutol3 | 0.009 | 0.866 |
| Meropenem3 | 0.286 | 0.178 |
| Vancomycin16 | 0.04 | 0.536 |
| Rv2680_day32 | -1.683 | 0.215 |
| H37Rv_KO_MarP | -0.586 | -0.308 |
| hypoxia_3wks | -0.108 | -0.315 |
| hypoxia_6wks | -0.029 | -0.267 |
| glycerol | -2.292 | -0.363 |
| cholesterol | -0.059 | 0.255 |
| AJ | 0.165 | -0.647 |
| Bibs02 | -0.219 | 0.668 |
| Bibs02c | -1.829 | -0.203 |
| BL6 | -0.514 | -0.473 |
| BL6a | -1.32 | -0.25 |
| BXD01 | -1.356 | 0.387 |
| BXD010 | -0.73 | 0.254 |
| BXD011 | -1.134 | -0.281 |
| BXD03 | -1.561 | -0.424 |
| BXD04 | -1.287 | -0.516 |
| BXD05 | -0.931 | -0.575 |
| BXD06 | -0.746 | 0.11 |
| BXD07 | -1.841 | -0.422 |
| BXD08 | -1.936 | 0.604 |
| BXD09 | -0.47 | -0.087 |
| CAST | -0.125 | -0.093 |
| CCcont | -1.112 | -0.794 |
| DS01 | -0.337 | -0.229 |
| DS02 | -0.747 | -0.072 |
| DS04 | -0.105 | -0.245 |
| DS0c | -1.068 | -0.058 |
| GP01 | -0.047 | -0.87 |
| GP02 | 1.583 | 0.479 |
| GP0c | -0.31 | -0.622 |
| NOD | -1.831 | -0.317 |
| NZO | 0.091 | -1.061 |
| PWK | -0.206 | 0.357 |
| H37Rv_KO_CtpC | -0.528 | 0.607 |
| H37Rv_KO_CtpD | 1.139 | 0.772 |
| H37Rv_KO_Rv1272 | 1.194 | 0.248 |
| H37Rv_KO_SugABC | -0.599 | -0.118 |
| H37Rv_KO_MbtN | 0.411 | -0.526 |
| Trans05 | 0.915 | -0.053 |
| macrophage_unactivated | 0.9 | 0.786 |
| IL1 | 0.285 | 1.308 |
| Rapamycin | 0.875 | 0.954 |
| Tcell | 0.313 | -0.186 |
| GMCSF | 0.042 | 0.779 |
| IFNab | 1.366 | 0.656 |
| IFNg | 1.398 | 1.323 |
| IFNg_GMCSF1 | 1.819 | 1.471 |
| Rv1432_day32 | -1.095 | 0.412 |
| Rv1565c_day32 | 1.297 | 0.6 |
| secA2_input | 0.412 | -1.335 |
| delta_Rv3594 | -0.795 | 0.283 |
| delta_Rv3717 | -0.673 | -0.789 |
| delta_Rv3811 | -0.14 | -0.706 |
| delta_Rv0954 | -0.459 | 0.013 |
| PonA1 | -0.723 | -0.203 |
| EccD1_KO | 1.2 | 1.161 |
| EspI_KO | 1.127 | 2.042 |
| PE35_KO | 1.963 | 1.059 |
| PPE68_KO | 1.421 | 1.193 |
| glycerol2 | 0.038 | 0.362 |
| lignocerate | -0.622 | -0.25 |
| oleate | -0.06 | 0.652 |
| phosphatidylcholine | -0.431 | 0.581 |
| acetate | -0.484 | -0.341 |
| glucAc | -0.549 | -1.227 |
| Rv0950ko | 0.223 | 0.347 |
| Rv1096ko | -0.205 | 1.059 |
| Rv3684ko | -0.062 | 0.583 |
| delta_otsA_trehalose | -0.294 | 1.549 |