Top 10 genes with highest correlation to Rv2297/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2989/- | (cc=0.5306) | info on Rv2989/- |
| Rv3079c/- | (cc=0.4974) | info on Rv3079c/- |
| Rv3057c/- | (cc=0.4895) | info on Rv3057c/- |
| Rv1106c/- | (cc=0.4855) | info on Rv1106c/- |
| Rv1939/- | (cc=0.4853) | info on Rv1939/- |
| Rv2652c/- | (cc=0.4813) | info on Rv2652c/- |
| Rv1706c/PPE23 | (cc=0.4626) | info on Rv1706c/PPE23 |
| Rv2604c/snoP | (cc=0.4617) | info on Rv2604c/snoP |
| Rv2087/- | (cc=0.4601) | info on Rv2087/- |
| Rv2620c/- | (cc=0.4467) | info on Rv2620c/- |
Correlation of Rv2297/- with Rv2087/-
Normalized LFCs for Rv2297/-:
(description and provenance of datasets)
| Rv2297/- | Rv2087/- | |
| Fe_supp_jason_reseq | 0.725 | 2.344 |
| low_pH_jason_reseq | 0.164 | 0.0 |
| NO_jason_reseq | -0.788 | 0.0 |
| B6_jason_reseq | 0.049 | 0.0 |
| MHCII_jason_reseq | -0.773 | 0.0 |
| Isoniazid02 | 0.255 | 0.089 |
| Rifampicin4 | 0.328 | 1.289 |
| Ethambutol3 | 0.009 | 2.23 |
| Meropenem3 | 0.286 | 2.705 |
| Vancomycin16 | 0.04 | -0.17 |
| Rv2680_day32 | -1.683 | 0.335 |
| H37Rv_KO_MarP | -0.586 | 0.0 |
| hypoxia_3wks | -0.108 | 0.0 |
| hypoxia_6wks | -0.029 | 2.955 |
| glycerol | -2.292 | -0.709 |
| cholesterol | -0.059 | 0.381 |
| AJ | 0.165 | 0.0 |
| Bibs02 | -0.219 | -0.642 |
| Bibs02c | -1.829 | 1.353 |
| BL6 | -0.514 | -0.439 |
| BL6a | -1.32 | -0.696 |
| BXD01 | -1.356 | -0.458 |
| BXD010 | -0.73 | -0.45 |
| BXD011 | -1.134 | -0.448 |
| BXD03 | -1.561 | -0.475 |
| BXD04 | -1.287 | -0.434 |
| BXD05 | -0.931 | -0.339 |
| BXD06 | -0.746 | -0.469 |
| BXD07 | -1.841 | -0.486 |
| BXD08 | -1.936 | -0.467 |
| BXD09 | -0.47 | -0.494 |
| CAST | -0.125 | 0.0 |
| CCcont | -1.112 | -0.24 |
| DS01 | -0.337 | -0.83 |
| DS02 | -0.747 | -0.764 |
| DS04 | -0.105 | -0.15 |
| DS0c | -1.068 | -0.762 |
| GP01 | -0.047 | 0.368 |
| GP02 | 1.583 | 1.656 |
| GP0c | -0.31 | 1.835 |
| NOD | -1.831 | 2.151 |
| NZO | 0.091 | -0.701 |
| PWK | -0.206 | -0.494 |
| H37Rv_KO_CtpC | -0.528 | -0.571 |
| H37Rv_KO_CtpD | 1.139 | -0.098 |
| H37Rv_KO_Rv1272 | 1.194 | 1.264 |
| H37Rv_KO_SugABC | -0.599 | -0.159 |
| H37Rv_KO_MbtN | 0.411 | 1.968 |
| Trans05 | 0.915 | 0.678 |
| macrophage_unactivated | 0.9 | 1.531 |
| IL1 | 0.285 | 0.0 |
| Rapamycin | 0.875 | 2.081 |
| Tcell | 0.313 | 0.0 |
| GMCSF | 0.042 | 1.281 |
| IFNab | 1.366 | 0.417 |
| IFNg | 1.398 | 0.0 |
| IFNg_GMCSF1 | 1.819 | 1.838 |
| Rv1432_day32 | -1.095 | 0.0 |
| Rv1565c_day32 | 1.297 | 0.0 |
| secA2_input | 0.412 | -2.248 |
| delta_Rv3594 | -0.795 | 0.684 |
| delta_Rv3717 | -0.673 | 1.939 |
| delta_Rv3811 | -0.14 | 1.228 |
| delta_Rv0954 | -0.459 | -0.375 |
| PonA1 | -0.723 | 1.333 |
| EccD1_KO | 1.2 | 2.897 |
| EspI_KO | 1.127 | 1.292 |
| PE35_KO | 1.963 | 3.436 |
| PPE68_KO | 1.421 | 5.071 |
| glycerol2 | 0.038 | 0.0 |
| lignocerate | -0.622 | 0.0 |
| oleate | -0.06 | 0.0 |
| phosphatidylcholine | -0.431 | 0.0 |
| acetate | -0.484 | 0.0 |
| glucAc | -0.549 | 0.0 |
| Rv0950ko | 0.223 | 1.809 |
| Rv1096ko | -0.205 | 0.0 |
| Rv3684ko | -0.062 | -0.832 |
| delta_otsA_trehalose | -0.294 | 0.382 |