Top 10 genes with highest correlation to Rv2297/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2989/- | (cc=0.5306) | info on Rv2989/- |
| Rv3079c/- | (cc=0.4974) | info on Rv3079c/- |
| Rv3057c/- | (cc=0.4895) | info on Rv3057c/- |
| Rv1106c/- | (cc=0.4855) | info on Rv1106c/- |
| Rv1939/- | (cc=0.4853) | info on Rv1939/- |
| Rv2652c/- | (cc=0.4813) | info on Rv2652c/- |
| Rv1706c/PPE23 | (cc=0.4626) | info on Rv1706c/PPE23 |
| Rv2604c/snoP | (cc=0.4617) | info on Rv2604c/snoP |
| Rv2087/- | (cc=0.4601) | info on Rv2087/- |
| Rv2620c/- | (cc=0.4467) | info on Rv2620c/- |
Correlation of Rv2297/- with Rv1706c/PPE23
Normalized LFCs for Rv2297/-:
(description and provenance of datasets)
| Rv2297/- | Rv1706c/PPE23 | |
| Fe_supp_jason_reseq | 0.725 | -0.759 |
| low_pH_jason_reseq | 0.164 | -0.356 |
| NO_jason_reseq | -0.788 | 0.011 |
| B6_jason_reseq | 0.049 | -0.189 |
| MHCII_jason_reseq | -0.773 | -0.046 |
| Isoniazid02 | 0.255 | 0.806 |
| Rifampicin4 | 0.328 | 0.298 |
| Ethambutol3 | 0.009 | 0.345 |
| Meropenem3 | 0.286 | 0.098 |
| Vancomycin16 | 0.04 | 0.188 |
| Rv2680_day32 | -1.683 | -0.618 |
| H37Rv_KO_MarP | -0.586 | -0.195 |
| hypoxia_3wks | -0.108 | 0.395 |
| hypoxia_6wks | -0.029 | -0.203 |
| glycerol | -2.292 | -1.1 |
| cholesterol | -0.059 | -0.975 |
| AJ | 0.165 | 0.084 |
| Bibs02 | -0.219 | -0.13 |
| Bibs02c | -1.829 | -0.553 |
| BL6 | -0.514 | -0.244 |
| BL6a | -1.32 | -0.693 |
| BXD01 | -1.356 | -0.38 |
| BXD010 | -0.73 | 0.04 |
| BXD011 | -1.134 | -0.244 |
| BXD03 | -1.561 | -0.33 |
| BXD04 | -1.287 | 0.02 |
| BXD05 | -0.931 | -0.159 |
| BXD06 | -0.746 | -0.527 |
| BXD07 | -1.841 | -0.03 |
| BXD08 | -1.936 | -0.251 |
| BXD09 | -0.47 | -0.475 |
| CAST | -0.125 | -0.03 |
| CCcont | -1.112 | -0.596 |
| DS01 | -0.337 | -0.407 |
| DS02 | -0.747 | -0.143 |
| DS04 | -0.105 | -0.607 |
| DS0c | -1.068 | -0.841 |
| GP01 | -0.047 | 0.483 |
| GP02 | 1.583 | 0.118 |
| GP0c | -0.31 | 0.034 |
| NOD | -1.831 | -0.272 |
| NZO | 0.091 | 0.236 |
| PWK | -0.206 | -0.026 |
| H37Rv_KO_CtpC | -0.528 | -0.22 |
| H37Rv_KO_CtpD | 1.139 | 0.441 |
| H37Rv_KO_Rv1272 | 1.194 | -0.325 |
| H37Rv_KO_SugABC | -0.599 | -0.159 |
| H37Rv_KO_MbtN | 0.411 | -0.073 |
| Trans05 | 0.915 | -0.605 |
| macrophage_unactivated | 0.9 | 0.584 |
| IL1 | 0.285 | 0.062 |
| Rapamycin | 0.875 | -0.104 |
| Tcell | 0.313 | 0.277 |
| GMCSF | 0.042 | 0.0 |
| IFNab | 1.366 | 0.1 |
| IFNg | 1.398 | -0.035 |
| IFNg_GMCSF1 | 1.819 | 0.041 |
| Rv1432_day32 | -1.095 | 0.074 |
| Rv1565c_day32 | 1.297 | 0.482 |
| secA2_input | 0.412 | -0.291 |
| delta_Rv3594 | -0.795 | -0.28 |
| delta_Rv3717 | -0.673 | 0.154 |
| delta_Rv3811 | -0.14 | 0.213 |
| delta_Rv0954 | -0.459 | 0.698 |
| PonA1 | -0.723 | 0.357 |
| EccD1_KO | 1.2 | 0.872 |
| EspI_KO | 1.127 | 1.067 |
| PE35_KO | 1.963 | 1.091 |
| PPE68_KO | 1.421 | 0.554 |
| glycerol2 | 0.038 | 0.511 |
| lignocerate | -0.622 | 0.281 |
| oleate | -0.06 | 0.852 |
| phosphatidylcholine | -0.431 | 0.725 |
| acetate | -0.484 | -0.09 |
| glucAc | -0.549 | -0.409 |
| Rv0950ko | 0.223 | 0.859 |
| Rv1096ko | -0.205 | 0.38 |
| Rv3684ko | -0.062 | 0.298 |
| delta_otsA_trehalose | -0.294 | -1.326 |