Top 10 genes with highest correlation to Rv2258c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1070c/echA8 | (cc=0.622) | info on Rv1070c/echA8 |
| Rv1287/- | (cc=0.6125) | info on Rv1287/- |
| Rv2563/- | (cc=0.5973) | info on Rv2563/- |
| Rv2564/glnQ | (cc=0.5686) | info on Rv2564/glnQ |
| Rv1592c/- | (cc=0.5653) | info on Rv1592c/- |
| Rv0634A/- | (cc=0.5573) | info on Rv0634A/- |
| Rv0465c/- | (cc=0.5573) | info on Rv0465c/- |
| Rv1069c/- | (cc=0.5542) | info on Rv1069c/- |
| Rv1323/fadA4 | (cc=0.5521) | info on Rv1323/fadA4 |
| Rv0561c/- | (cc=0.5458) | info on Rv0561c/- |
Correlation of Rv2258c/- with Rv2564/glnQ
Normalized LFCs for Rv2258c/-:
(description and provenance of datasets)
| Rv2258c/- | Rv2564/glnQ | |
| Fe_supp_jason_reseq | 0.57 | 2.013 |
| low_pH_jason_reseq | -0.47 | -0.333 |
| NO_jason_reseq | -0.564 | -1.853 |
| B6_jason_reseq | -1.085 | -1.519 |
| MHCII_jason_reseq | 0.032 | -0.932 |
| Isoniazid02 | 0.607 | 0.036 |
| Rifampicin4 | -0.097 | -2.134 |
| Ethambutol3 | 1.936 | 1.918 |
| Meropenem3 | 1.325 | 0.649 |
| Vancomycin16 | -0.233 | -0.578 |
| Rv2680_day32 | -0.169 | -2.923 |
| H37Rv_KO_MarP | 0.711 | 0.621 |
| hypoxia_3wks | -1.782 | -3.038 |
| hypoxia_6wks | -1.255 | -2.011 |
| glycerol | 1.934 | 0.676 |
| cholesterol | 1.239 | 0.44 |
| AJ | -0.435 | -3.514 |
| Bibs02 | 0.026 | -2.262 |
| Bibs02c | -0.741 | 0.652 |
| BL6 | -0.521 | -2.64 |
| BL6a | -0.934 | -1.086 |
| BXD01 | -1.145 | -3.107 |
| BXD010 | 0.009 | -1.829 |
| BXD011 | -0.869 | -2.911 |
| BXD03 | -0.079 | -1.721 |
| BXD04 | -0.95 | -2.264 |
| BXD05 | -1.205 | -3.076 |
| BXD06 | -0.839 | -2.714 |
| BXD07 | -1.127 | -2.716 |
| BXD08 | -0.854 | -2.704 |
| BXD09 | -1.235 | -3.352 |
| CAST | -0.574 | -0.429 |
| CCcont | 0.411 | 0.355 |
| DS01 | 0.21 | 2.322 |
| DS02 | 0.67 | 0.607 |
| DS04 | -1.026 | 2.805 |
| DS0c | -0.195 | 1.673 |
| GP01 | -1.126 | -2.355 |
| GP02 | -0.185 | -1.985 |
| GP0c | -0.461 | -3.102 |
| NOD | -1.033 | 0.552 |
| NZO | -0.629 | -2.766 |
| PWK | -0.561 | 1.212 |
| H37Rv_KO_CtpC | -0.184 | -0.95 |
| H37Rv_KO_CtpD | 0.728 | -0.764 |
| H37Rv_KO_Rv1272 | -0.486 | -1.846 |
| H37Rv_KO_SugABC | 0.738 | -1.5 |
| H37Rv_KO_MbtN | 0.267 | -1.952 |
| Trans05 | 0.256 | -2.986 |
| macrophage_unactivated | -0.155 | 0.947 |
| IL1 | -0.919 | -1.818 |
| Rapamycin | -0.23 | -0.543 |
| Tcell | 0.039 | 0.0 |
| GMCSF | 0.095 | 0.671 |
| IFNab | -0.227 | 0.163 |
| IFNg | -1.208 | -1.013 |
| IFNg_GMCSF1 | -1.166 | -0.179 |
| Rv1432_day32 | -0.347 | -3.206 |
| Rv1565c_day32 | 0.687 | -0.509 |
| secA2_input | -0.855 | -1.198 |
| delta_Rv3594 | -0.439 | -2.272 |
| delta_Rv3717 | -0.49 | -1.869 |
| delta_Rv3811 | -0.782 | -1.817 |
| delta_Rv0954 | 1.698 | 1.292 |
| PonA1 | 1.34 | 2.505 |
| EccD1_KO | 0.181 | 0.0 |
| EspI_KO | 0.342 | -0.274 |
| PE35_KO | 0.548 | 1.126 |
| PPE68_KO | 0.547 | 0.816 |
| glycerol2 | 0.258 | -1.572 |
| lignocerate | 0.371 | -0.049 |
| oleate | 0.099 | -2.139 |
| phosphatidylcholine | 0.126 | -0.874 |
| acetate | 0.321 | 1.119 |
| glucAc | 0.416 | 0.357 |
| Rv0950ko | 0.865 | 1.414 |
| Rv1096ko | 0.639 | 0.549 |
| Rv3684ko | -0.046 | 0.088 |
| delta_otsA_trehalose | 0.374 | 1.289 |