Top 10 genes with highest correlation to Rv2219/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1352/- | (cc=0.7277) | info on Rv1352/- |
| Rv2237/- | (cc=0.6407) | info on Rv2237/- |
| Rv2119/- | (cc=0.6369) | info on Rv2119/- |
| Rv0278c/PE_PGRS3 | (cc=0.6074) | info on Rv0278c/PE_PGRS3 |
| Rv0945/- | (cc=0.58) | info on Rv0945/- |
| Rv3819/- | (cc=0.5714) | info on Rv3819/- |
| Rv0042c/- | (cc=0.5704) | info on Rv0042c/- |
| Rv3353c/- | (cc=0.5698) | info on Rv3353c/- |
| Rv3335c/- | (cc=0.5694) | info on Rv3335c/- |
| Rv3208A/TB9.4 | (cc=0.5657) | info on Rv3208A/TB9.4 |
Correlation of Rv2219/- with Rv3819/-
Normalized LFCs for Rv2219/-:
(description and provenance of datasets)
| Rv2219/- | Rv3819/- | |
| Fe_supp_jason_reseq | -0.137 | -0.451 |
| low_pH_jason_reseq | -1.282 | -0.833 |
| NO_jason_reseq | -0.228 | -0.452 |
| B6_jason_reseq | -0.097 | -0.8 |
| MHCII_jason_reseq | 0.229 | -0.487 |
| Isoniazid02 | 0.162 | -0.799 |
| Rifampicin4 | -0.682 | -0.255 |
| Ethambutol3 | -0.146 | -0.342 |
| Meropenem3 | -0.474 | -0.285 |
| Vancomycin16 | -0.669 | -0.249 |
| Rv2680_day32 | -1.75 | 0.188 |
| H37Rv_KO_MarP | 0.404 | 1.153 |
| hypoxia_3wks | -1.655 | -1.348 |
| hypoxia_6wks | -1.625 | -0.942 |
| glycerol | 0.313 | -0.705 |
| cholesterol | -0.676 | -1.165 |
| AJ | 0.096 | -1.706 |
| Bibs02 | 1.766 | -0.816 |
| Bibs02c | -1.605 | -0.321 |
| BL6 | 1.144 | 1.018 |
| BL6a | -1.058 | -0.603 |
| BXD01 | 0.534 | 0.406 |
| BXD010 | -0.684 | 0.566 |
| BXD011 | -0.977 | -0.777 |
| BXD03 | -0.388 | -0.581 |
| BXD04 | -0.845 | 0.28 |
| BXD05 | 0.347 | -0.295 |
| BXD06 | -0.623 | -0.446 |
| BXD07 | 0.883 | 0.602 |
| BXD08 | 0.467 | 0.382 |
| BXD09 | -0.122 | -0.58 |
| CAST | -0.307 | 0.756 |
| CCcont | 1.891 | 1.057 |
| DS01 | -0.678 | 0.736 |
| DS02 | 1.068 | -0.148 |
| DS04 | 0.953 | 0.843 |
| DS0c | -1.158 | -1.501 |
| GP01 | 0.986 | -2.323 |
| GP02 | -0.388 | -0.576 |
| GP0c | 0.248 | -2.26 |
| NOD | -0.905 | 2.603 |
| NZO | -1.065 | 0.47 |
| PWK | -1.189 | 1.017 |
| H37Rv_KO_CtpC | -0.558 | -0.401 |
| H37Rv_KO_CtpD | 2.726 | 0.763 |
| H37Rv_KO_Rv1272 | -0.753 | -0.833 |
| H37Rv_KO_SugABC | -0.677 | -0.316 |
| H37Rv_KO_MbtN | -0.296 | -0.854 |
| Trans05 | -1.121 | -0.605 |
| macrophage_unactivated | 0.234 | 0.956 |
| IL1 | -2.337 | -1.922 |
| Rapamycin | -2.418 | -1.703 |
| Tcell | 1.098 | 0.476 |
| GMCSF | -2.445 | -1.584 |
| IFNab | -2.382 | -1.542 |
| IFNg | -2.475 | -1.732 |
| IFNg_GMCSF1 | -2.476 | -2.19 |
| Rv1432_day32 | -0.18 | 0.374 |
| Rv1565c_day32 | -0.706 | 0.556 |
| secA2_input | 0.0 | -1.446 |
| delta_Rv3594 | 2.213 | -0.304 |
| delta_Rv3717 | 1.562 | -1.016 |
| delta_Rv3811 | 1.487 | 0.586 |
| delta_Rv0954 | 0.311 | 0.129 |
| PonA1 | -0.159 | -0.527 |
| EccD1_KO | 0.697 | 0.724 |
| EspI_KO | 0.605 | 0.248 |
| PE35_KO | 1.779 | -0.362 |
| PPE68_KO | 1.789 | 0.624 |
| glycerol2 | 3.845 | 1.651 |
| lignocerate | 3.444 | 2.557 |
| oleate | 0.0 | -0.556 |
| phosphatidylcholine | 3.37 | 2.018 |
| acetate | 3.661 | 4.972 |
| glucAc | 3.26 | 2.696 |
| Rv0950ko | -2.433 | 0.148 |
| Rv1096ko | -2.021 | 1.215 |
| Rv3684ko | -0.573 | 0.514 |
| delta_otsA_trehalose | 0.321 | 1.218 |