Top 10 genes with highest correlation to Rv2219/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1352/- | (cc=0.7277) | info on Rv1352/- |
| Rv2237/- | (cc=0.6407) | info on Rv2237/- |
| Rv2119/- | (cc=0.6369) | info on Rv2119/- |
| Rv0278c/PE_PGRS3 | (cc=0.6074) | info on Rv0278c/PE_PGRS3 |
| Rv0945/- | (cc=0.58) | info on Rv0945/- |
| Rv3819/- | (cc=0.5714) | info on Rv3819/- |
| Rv0042c/- | (cc=0.5704) | info on Rv0042c/- |
| Rv3353c/- | (cc=0.5698) | info on Rv3353c/- |
| Rv3335c/- | (cc=0.5694) | info on Rv3335c/- |
| Rv3208A/TB9.4 | (cc=0.5657) | info on Rv3208A/TB9.4 |
Correlation of Rv2219/- with Rv1352/-
Normalized LFCs for Rv2219/-:
(description and provenance of datasets)
| Rv2219/- | Rv1352/- | |
| Fe_supp_jason_reseq | -0.137 | 2.019 |
| low_pH_jason_reseq | -1.282 | -0.09 |
| NO_jason_reseq | -0.228 | -0.339 |
| B6_jason_reseq | -0.097 | 0.675 |
| MHCII_jason_reseq | 0.229 | -0.018 |
| Isoniazid02 | 0.162 | 0.127 |
| Rifampicin4 | -0.682 | 0.043 |
| Ethambutol3 | -0.146 | -0.165 |
| Meropenem3 | -0.474 | 0.334 |
| Vancomycin16 | -0.669 | 0.862 |
| Rv2680_day32 | -1.75 | 0.109 |
| H37Rv_KO_MarP | 0.404 | -0.246 |
| hypoxia_3wks | -1.655 | -1.077 |
| hypoxia_6wks | -1.625 | -1.184 |
| glycerol | 0.313 | -0.162 |
| cholesterol | -0.676 | 1.24 |
| AJ | 0.096 | -0.884 |
| Bibs02 | 1.766 | 0.901 |
| Bibs02c | -1.605 | 1.391 |
| BL6 | 1.144 | 1.178 |
| BL6a | -1.058 | 0.865 |
| BXD01 | 0.534 | 1.381 |
| BXD010 | -0.684 | 0.152 |
| BXD011 | -0.977 | 0.072 |
| BXD03 | -0.388 | -0.095 |
| BXD04 | -0.845 | 0.949 |
| BXD05 | 0.347 | 1.069 |
| BXD06 | -0.623 | 0.1 |
| BXD07 | 0.883 | 1.075 |
| BXD08 | 0.467 | 0.438 |
| BXD09 | -0.122 | 0.191 |
| CAST | -0.307 | 0.465 |
| CCcont | 1.891 | 1.63 |
| DS01 | -0.678 | 0.986 |
| DS02 | 1.068 | 0.277 |
| DS04 | 0.953 | 0.468 |
| DS0c | -1.158 | -0.826 |
| GP01 | 0.986 | -0.735 |
| GP02 | -0.388 | 1.698 |
| GP0c | 0.248 | 0.437 |
| NOD | -0.905 | -0.044 |
| NZO | -1.065 | -1.026 |
| PWK | -1.189 | -0.138 |
| H37Rv_KO_CtpC | -0.558 | -0.943 |
| H37Rv_KO_CtpD | 2.726 | 1.079 |
| H37Rv_KO_Rv1272 | -0.753 | -0.499 |
| H37Rv_KO_SugABC | -0.677 | -1.259 |
| H37Rv_KO_MbtN | -0.296 | -1.93 |
| Trans05 | -1.121 | -0.327 |
| macrophage_unactivated | 0.234 | 0.78 |
| IL1 | -2.337 | -0.552 |
| Rapamycin | -2.418 | 0.374 |
| Tcell | 1.098 | 1.714 |
| GMCSF | -2.445 | -1.281 |
| IFNab | -2.382 | -1.4 |
| IFNg | -2.475 | -1.122 |
| IFNg_GMCSF1 | -2.476 | -1.668 |
| Rv1432_day32 | -0.18 | -1.342 |
| Rv1565c_day32 | -0.706 | -1.69 |
| secA2_input | 0.0 | 0.603 |
| delta_Rv3594 | 2.213 | 2.082 |
| delta_Rv3717 | 1.562 | 1.397 |
| delta_Rv3811 | 1.487 | 1.674 |
| delta_Rv0954 | 0.311 | -0.981 |
| PonA1 | -0.159 | 1.367 |
| EccD1_KO | 0.697 | 1.049 |
| EspI_KO | 0.605 | 1.089 |
| PE35_KO | 1.779 | 0.615 |
| PPE68_KO | 1.789 | 1.302 |
| glycerol2 | 3.845 | 2.599 |
| lignocerate | 3.444 | 2.813 |
| oleate | 0.0 | 0.624 |
| phosphatidylcholine | 3.37 | 2.882 |
| acetate | 3.661 | 2.864 |
| glucAc | 3.26 | 2.241 |
| Rv0950ko | -2.433 | -2.165 |
| Rv1096ko | -2.021 | -0.914 |
| Rv3684ko | -0.573 | -0.124 |
| delta_otsA_trehalose | 0.321 | 0.508 |