Top 10 genes with highest correlation to Rv2219/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1352/- | (cc=0.7277) | info on Rv1352/- |
| Rv2237/- | (cc=0.6407) | info on Rv2237/- |
| Rv2119/- | (cc=0.6369) | info on Rv2119/- |
| Rv0278c/PE_PGRS3 | (cc=0.6074) | info on Rv0278c/PE_PGRS3 |
| Rv0945/- | (cc=0.58) | info on Rv0945/- |
| Rv3819/- | (cc=0.5714) | info on Rv3819/- |
| Rv0042c/- | (cc=0.5704) | info on Rv0042c/- |
| Rv3353c/- | (cc=0.5698) | info on Rv3353c/- |
| Rv3335c/- | (cc=0.5694) | info on Rv3335c/- |
| Rv3208A/TB9.4 | (cc=0.5657) | info on Rv3208A/TB9.4 |
Correlation of Rv2219/- with Rv3208A/TB9.4
Normalized LFCs for Rv2219/-:
(description and provenance of datasets)
| Rv2219/- | Rv3208A/TB9.4 | |
| Fe_supp_jason_reseq | -0.137 | 2.398 |
| low_pH_jason_reseq | -1.282 | 0.694 |
| NO_jason_reseq | -0.228 | -0.263 |
| B6_jason_reseq | -0.097 | 1.57 |
| MHCII_jason_reseq | 0.229 | 0.929 |
| Isoniazid02 | 0.162 | -0.518 |
| Rifampicin4 | -0.682 | 0.826 |
| Ethambutol3 | -0.146 | 2.476 |
| Meropenem3 | -0.474 | 0.126 |
| Vancomycin16 | -0.669 | 0.783 |
| Rv2680_day32 | -1.75 | 0.442 |
| H37Rv_KO_MarP | 0.404 | 1.016 |
| hypoxia_3wks | -1.655 | -1.882 |
| hypoxia_6wks | -1.625 | -1.633 |
| glycerol | 0.313 | 0.549 |
| cholesterol | -0.676 | 0.952 |
| AJ | 0.096 | -1.264 |
| Bibs02 | 1.766 | -0.898 |
| Bibs02c | -1.605 | 0.887 |
| BL6 | 1.144 | -0.948 |
| BL6a | -1.058 | 1.267 |
| BXD01 | 0.534 | -0.479 |
| BXD010 | -0.684 | -1.775 |
| BXD011 | -0.977 | -0.226 |
| BXD03 | -0.388 | -1.273 |
| BXD04 | -0.845 | -1.268 |
| BXD05 | 0.347 | -1.38 |
| BXD06 | -0.623 | -0.967 |
| BXD07 | 0.883 | -1.096 |
| BXD08 | 0.467 | -1.688 |
| BXD09 | -0.122 | -1.267 |
| CAST | -0.307 | -1.255 |
| CCcont | 1.891 | 1.69 |
| DS01 | -0.678 | -0.71 |
| DS02 | 1.068 | -0.607 |
| DS04 | 0.953 | -0.76 |
| DS0c | -1.158 | 0.267 |
| GP01 | 0.986 | 0.559 |
| GP02 | -0.388 | -0.603 |
| GP0c | 0.248 | 0.796 |
| NOD | -0.905 | 0.877 |
| NZO | -1.065 | 0.217 |
| PWK | -1.189 | -0.816 |
| H37Rv_KO_CtpC | -0.558 | 0.421 |
| H37Rv_KO_CtpD | 2.726 | 0.509 |
| H37Rv_KO_Rv1272 | -0.753 | 1.508 |
| H37Rv_KO_SugABC | -0.677 | 1.283 |
| H37Rv_KO_MbtN | -0.296 | -1.428 |
| Trans05 | -1.121 | 1.464 |
| macrophage_unactivated | 0.234 | -0.316 |
| IL1 | -2.337 | -2.029 |
| Rapamycin | -2.418 | -0.988 |
| Tcell | 1.098 | -0.215 |
| GMCSF | -2.445 | -0.544 |
| IFNab | -2.382 | -0.2 |
| IFNg | -2.475 | -1.438 |
| IFNg_GMCSF1 | -2.476 | -2.85 |
| Rv1432_day32 | -0.18 | -0.314 |
| Rv1565c_day32 | -0.706 | 2.132 |
| secA2_input | 0.0 | -2.134 |
| delta_Rv3594 | 2.213 | 3.706 |
| delta_Rv3717 | 1.562 | 2.44 |
| delta_Rv3811 | 1.487 | 2.235 |
| delta_Rv0954 | 0.311 | 2.571 |
| PonA1 | -0.159 | 0.794 |
| EccD1_KO | 0.697 | 0.52 |
| EspI_KO | 0.605 | 0.821 |
| PE35_KO | 1.779 | 1.12 |
| PPE68_KO | 1.789 | 2.259 |
| glycerol2 | 3.845 | 3.174 |
| lignocerate | 3.444 | 2.649 |
| oleate | 0.0 | -2.12 |
| phosphatidylcholine | 3.37 | 2.465 |
| acetate | 3.661 | 4.178 |
| glucAc | 3.26 | 3.653 |
| Rv0950ko | -2.433 | -1.167 |
| Rv1096ko | -2.021 | -0.585 |
| Rv3684ko | -0.573 | 0.802 |
| delta_otsA_trehalose | 0.321 | 0.955 |