Top 10 genes with highest correlation to Rv2219/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1352/- | (cc=0.7277) | info on Rv1352/- |
| Rv2237/- | (cc=0.6407) | info on Rv2237/- |
| Rv2119/- | (cc=0.6369) | info on Rv2119/- |
| Rv0278c/PE_PGRS3 | (cc=0.6074) | info on Rv0278c/PE_PGRS3 |
| Rv0945/- | (cc=0.58) | info on Rv0945/- |
| Rv3819/- | (cc=0.5714) | info on Rv3819/- |
| Rv0042c/- | (cc=0.5704) | info on Rv0042c/- |
| Rv3353c/- | (cc=0.5698) | info on Rv3353c/- |
| Rv3335c/- | (cc=0.5694) | info on Rv3335c/- |
| Rv3208A/TB9.4 | (cc=0.5657) | info on Rv3208A/TB9.4 |
Correlation of Rv2219/- with Rv2237/-
Normalized LFCs for Rv2219/-:
(description and provenance of datasets)
| Rv2219/- | Rv2237/- | |
| Fe_supp_jason_reseq | -0.137 | 0.23 |
| low_pH_jason_reseq | -1.282 | -0.676 |
| NO_jason_reseq | -0.228 | -0.302 |
| B6_jason_reseq | -0.097 | -0.548 |
| MHCII_jason_reseq | 0.229 | 0.053 |
| Isoniazid02 | 0.162 | 0.397 |
| Rifampicin4 | -0.682 | -0.674 |
| Ethambutol3 | -0.146 | -0.32 |
| Meropenem3 | -0.474 | -0.231 |
| Vancomycin16 | -0.669 | -0.064 |
| Rv2680_day32 | -1.75 | 0.594 |
| H37Rv_KO_MarP | 0.404 | 0.254 |
| hypoxia_3wks | -1.655 | -0.762 |
| hypoxia_6wks | -1.625 | -0.814 |
| glycerol | 0.313 | 0.12 |
| cholesterol | -0.676 | 0.447 |
| AJ | 0.096 | 0.235 |
| Bibs02 | 1.766 | 0.013 |
| Bibs02c | -1.605 | -0.52 |
| BL6 | 1.144 | 0.847 |
| BL6a | -1.058 | 0.201 |
| BXD01 | 0.534 | -0.443 |
| BXD010 | -0.684 | 0.241 |
| BXD011 | -0.977 | 0.53 |
| BXD03 | -0.388 | -0.725 |
| BXD04 | -0.845 | -0.369 |
| BXD05 | 0.347 | 0.165 |
| BXD06 | -0.623 | 0.284 |
| BXD07 | 0.883 | -0.399 |
| BXD08 | 0.467 | -0.084 |
| BXD09 | -0.122 | 0.228 |
| CAST | -0.307 | -0.464 |
| CCcont | 1.891 | 1.023 |
| DS01 | -0.678 | 0.399 |
| DS02 | 1.068 | 1.096 |
| DS04 | 0.953 | 0.45 |
| DS0c | -1.158 | 0.129 |
| GP01 | 0.986 | 0.95 |
| GP02 | -0.388 | -0.93 |
| GP0c | 0.248 | 0.356 |
| NOD | -0.905 | -0.371 |
| NZO | -1.065 | 0.35 |
| PWK | -1.189 | -0.625 |
| H37Rv_KO_CtpC | -0.558 | -0.013 |
| H37Rv_KO_CtpD | 2.726 | -0.315 |
| H37Rv_KO_Rv1272 | -0.753 | -0.297 |
| H37Rv_KO_SugABC | -0.677 | 0.422 |
| H37Rv_KO_MbtN | -0.296 | 0.656 |
| Trans05 | -1.121 | 0.02 |
| macrophage_unactivated | 0.234 | 0.076 |
| IL1 | -2.337 | 0.24 |
| Rapamycin | -2.418 | -0.11 |
| Tcell | 1.098 | 0.339 |
| GMCSF | -2.445 | -0.261 |
| IFNab | -2.382 | 0.0 |
| IFNg | -2.475 | 0.644 |
| IFNg_GMCSF1 | -2.476 | 0.628 |
| Rv1432_day32 | -0.18 | -0.01 |
| Rv1565c_day32 | -0.706 | -0.479 |
| secA2_input | 0.0 | 0.252 |
| delta_Rv3594 | 2.213 | 1.153 |
| delta_Rv3717 | 1.562 | 1.364 |
| delta_Rv3811 | 1.487 | 0.772 |
| delta_Rv0954 | 0.311 | 0.16 |
| PonA1 | -0.159 | 0.84 |
| EccD1_KO | 0.697 | 0.53 |
| EspI_KO | 0.605 | 0.91 |
| PE35_KO | 1.779 | 0.858 |
| PPE68_KO | 1.789 | 0.733 |
| glycerol2 | 3.845 | 1.88 |
| lignocerate | 3.444 | 2.527 |
| oleate | 0.0 | -1.276 |
| phosphatidylcholine | 3.37 | 2.426 |
| acetate | 3.661 | 2.72 |
| glucAc | 3.26 | 2.503 |
| Rv0950ko | -2.433 | 0.0 |
| Rv1096ko | -2.021 | -0.078 |
| Rv3684ko | -0.573 | -0.819 |
| delta_otsA_trehalose | 0.321 | -0.569 |