Top 10 genes with highest correlation to Rv2170/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1006/- | (cc=0.6425) | info on Rv1006/- |
| Rv2363/amiA2 | (cc=0.5989) | info on Rv2363/amiA2 |
| Rv0361/- | (cc=0.5743) | info on Rv0361/- |
| Rv2051c/ppm1 | (cc=0.5656) | info on Rv2051c/ppm1 |
| Rv2171/lppM | (cc=0.5652) | info on Rv2171/lppM |
| Rv0999/- | (cc=0.5513) | info on Rv0999/- |
| Rv2710/sigB | (cc=0.5437) | info on Rv2710/sigB |
| Rv1860/apa | (cc=0.5352) | info on Rv1860/apa |
| Rv0561c/- | (cc=0.5254) | info on Rv0561c/- |
| Rv2869c/rip | (cc=0.524) | info on Rv2869c/rip |
Correlation of Rv2170/- with Rv2363/amiA2
Normalized LFCs for Rv2170/-:
(description and provenance of datasets)
| Rv2170/- | Rv2363/amiA2 | |
| Fe_supp_jason_reseq | 2.939 | 2.878 |
| low_pH_jason_reseq | -0.231 | -0.634 |
| NO_jason_reseq | -1.205 | -0.633 |
| B6_jason_reseq | -0.842 | -0.421 |
| MHCII_jason_reseq | 0.0 | 1.355 |
| Isoniazid02 | -0.79 | -2.015 |
| Rifampicin4 | -5.992 | -5.334 |
| Ethambutol3 | -0.494 | 0.556 |
| Meropenem3 | -0.889 | -2.857 |
| Vancomycin16 | -1.125 | -3.892 |
| Rv2680_day32 | -1.871 | -0.89 |
| H37Rv_KO_MarP | -2.007 | -3.586 |
| hypoxia_3wks | -0.77 | -0.989 |
| hypoxia_6wks | -2.088 | -1.934 |
| glycerol | 1.056 | 1.138 |
| cholesterol | 2.127 | 1.12 |
| AJ | -1.14 | -0.373 |
| Bibs02 | -1.325 | 1.658 |
| Bibs02c | 0.774 | 2.025 |
| BL6 | -1.687 | 0.119 |
| BL6a | -1.058 | 0.739 |
| BXD01 | -1.529 | -0.136 |
| BXD010 | -1.728 | 0.062 |
| BXD011 | -1.603 | -0.133 |
| BXD03 | -1.701 | -1.048 |
| BXD04 | -1.792 | -0.723 |
| BXD05 | -1.477 | -0.14 |
| BXD06 | -1.68 | -0.669 |
| BXD07 | -1.419 | -0.144 |
| BXD08 | -1.927 | 0.297 |
| BXD09 | -1.018 | -0.31 |
| CAST | -1.036 | -1.155 |
| CCcont | -0.164 | 2.288 |
| DS01 | -1.16 | 0.431 |
| DS02 | -1.161 | 1.226 |
| DS04 | -1.307 | -0.202 |
| DS0c | 0.68 | 1.677 |
| GP01 | -0.368 | 0.26 |
| GP02 | 0.462 | -0.486 |
| GP0c | -0.752 | 0.485 |
| NOD | 0.428 | -0.789 |
| NZO | -2.189 | -0.845 |
| PWK | -0.732 | -1.147 |
| H37Rv_KO_CtpC | 0.631 | 1.007 |
| H37Rv_KO_CtpD | -0.255 | 0.819 |
| H37Rv_KO_Rv1272 | -1.261 | 0.134 |
| H37Rv_KO_SugABC | -1.336 | 0.918 |
| H37Rv_KO_MbtN | -0.644 | 0.61 |
| Trans05 | 0.034 | 0.698 |
| macrophage_unactivated | 0.0 | 2.468 |
| IL1 | 0.0 | -0.356 |
| Rapamycin | 0.936 | 0.0 |
| Tcell | 0.0 | -1.29 |
| GMCSF | 0.618 | -0.156 |
| IFNab | 0.922 | 1.076 |
| IFNg | 0.428 | -0.861 |
| IFNg_GMCSF1 | 0.958 | 0.349 |
| Rv1432_day32 | -1.304 | -0.13 |
| Rv1565c_day32 | -0.502 | 1.164 |
| secA2_input | 0.479 | -0.178 |
| delta_Rv3594 | -0.746 | 1.465 |
| delta_Rv3717 | -0.773 | 1.31 |
| delta_Rv3811 | 0.541 | 1.487 |
| delta_Rv0954 | 1.149 | 1.2 |
| PonA1 | 0.328 | 0.238 |
| EccD1_KO | -1.713 | -0.592 |
| EspI_KO | -0.676 | 0.553 |
| PE35_KO | -0.805 | 0.793 |
| PPE68_KO | -0.637 | 1.264 |
| glycerol2 | -1.159 | 0.189 |
| lignocerate | -0.353 | 0.856 |
| oleate | -1.381 | 0.116 |
| phosphatidylcholine | -0.913 | -0.253 |
| acetate | -0.825 | 0.924 |
| glucAc | -1.236 | 0.217 |
| Rv0950ko | -1.634 | -3.54 |
| Rv1096ko | -1.176 | -1.858 |
| Rv3684ko | 0.671 | 1.408 |
| delta_otsA_trehalose | 0.243 | 0.648 |