Top 10 genes with highest correlation to Rv2170/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1006/- | (cc=0.6425) | info on Rv1006/- |
| Rv2363/amiA2 | (cc=0.5989) | info on Rv2363/amiA2 |
| Rv0361/- | (cc=0.5743) | info on Rv0361/- |
| Rv2051c/ppm1 | (cc=0.5656) | info on Rv2051c/ppm1 |
| Rv2171/lppM | (cc=0.5652) | info on Rv2171/lppM |
| Rv0999/- | (cc=0.5513) | info on Rv0999/- |
| Rv2710/sigB | (cc=0.5437) | info on Rv2710/sigB |
| Rv1860/apa | (cc=0.5352) | info on Rv1860/apa |
| Rv0561c/- | (cc=0.5254) | info on Rv0561c/- |
| Rv2869c/rip | (cc=0.524) | info on Rv2869c/rip |
Correlation of Rv2170/- with Rv1006/-
Normalized LFCs for Rv2170/-:
(description and provenance of datasets)
| Rv2170/- | Rv1006/- | |
| Fe_supp_jason_reseq | 2.939 | 2.892 |
| low_pH_jason_reseq | -0.231 | 0.596 |
| NO_jason_reseq | -1.205 | -0.845 |
| B6_jason_reseq | -0.842 | -0.357 |
| MHCII_jason_reseq | 0.0 | 1.742 |
| Isoniazid02 | -0.79 | 0.071 |
| Rifampicin4 | -5.992 | -5.058 |
| Ethambutol3 | -0.494 | 0.766 |
| Meropenem3 | -0.889 | -1.508 |
| Vancomycin16 | -1.125 | -3.404 |
| Rv2680_day32 | -1.871 | -0.793 |
| H37Rv_KO_MarP | -2.007 | -2.348 |
| hypoxia_3wks | -0.77 | -0.574 |
| hypoxia_6wks | -2.088 | -1.84 |
| glycerol | 1.056 | 1.005 |
| cholesterol | 2.127 | 0.957 |
| AJ | -1.14 | -0.551 |
| Bibs02 | -1.325 | 0.828 |
| Bibs02c | 0.774 | 1.343 |
| BL6 | -1.687 | 0.462 |
| BL6a | -1.058 | 0.943 |
| BXD01 | -1.529 | 0.497 |
| BXD010 | -1.728 | -0.169 |
| BXD011 | -1.603 | -0.093 |
| BXD03 | -1.701 | 0.115 |
| BXD04 | -1.792 | 0.202 |
| BXD05 | -1.477 | -0.233 |
| BXD06 | -1.68 | -0.508 |
| BXD07 | -1.419 | -0.101 |
| BXD08 | -1.927 | 0.135 |
| BXD09 | -1.018 | 0.119 |
| CAST | -1.036 | -1.473 |
| CCcont | -0.164 | 1.936 |
| DS01 | -1.16 | 0.491 |
| DS02 | -1.161 | 0.775 |
| DS04 | -1.307 | 0.197 |
| DS0c | 0.68 | 1.328 |
| GP01 | -0.368 | -0.054 |
| GP02 | 0.462 | -0.712 |
| GP0c | -0.752 | -0.598 |
| NOD | 0.428 | -1.095 |
| NZO | -2.189 | -0.345 |
| PWK | -0.732 | -1.191 |
| H37Rv_KO_CtpC | 0.631 | 1.233 |
| H37Rv_KO_CtpD | -0.255 | 1.748 |
| H37Rv_KO_Rv1272 | -1.261 | 0.273 |
| H37Rv_KO_SugABC | -1.336 | 0.525 |
| H37Rv_KO_MbtN | -0.644 | 0.455 |
| Trans05 | 0.034 | -0.254 |
| macrophage_unactivated | 0.0 | 1.793 |
| IL1 | 0.0 | -0.154 |
| Rapamycin | 0.936 | 1.114 |
| Tcell | 0.0 | 0.166 |
| GMCSF | 0.618 | 0.626 |
| IFNab | 0.922 | 0.444 |
| IFNg | 0.428 | 0.0 |
| IFNg_GMCSF1 | 0.958 | 0.314 |
| Rv1432_day32 | -1.304 | 0.228 |
| Rv1565c_day32 | -0.502 | 0.734 |
| secA2_input | 0.479 | -0.207 |
| delta_Rv3594 | -0.746 | 1.345 |
| delta_Rv3717 | -0.773 | 0.19 |
| delta_Rv3811 | 0.541 | 0.953 |
| delta_Rv0954 | 1.149 | 1.578 |
| PonA1 | 0.328 | 0.646 |
| EccD1_KO | -1.713 | -0.908 |
| EspI_KO | -0.676 | -0.445 |
| PE35_KO | -0.805 | -0.738 |
| PPE68_KO | -0.637 | 0.182 |
| glycerol2 | -1.159 | -0.553 |
| lignocerate | -0.353 | 0.308 |
| oleate | -1.381 | 0.0 |
| phosphatidylcholine | -0.913 | -0.021 |
| acetate | -0.825 | 0.025 |
| glucAc | -1.236 | -0.269 |
| Rv0950ko | -1.634 | -2.439 |
| Rv1096ko | -1.176 | -1.384 |
| Rv3684ko | 0.671 | -0.229 |
| delta_otsA_trehalose | 0.243 | -0.348 |