TnSeqCorr

Top 10 genes with highest correlation to Rv2077c/-:

update plotcorrelationlink to info on gene
Rv1781c/malQ (cc=0.588) info on Rv1781c/malQ
Rv3738c/PPE66 (cc=0.537) info on Rv3738c/PPE66
Rv3688c/- (cc=0.5317) info on Rv3688c/-
Rv1103c/mazE3 (cc=0.5285) info on Rv1103c/mazE3
Rv2390c/- (cc=0.526) info on Rv2390c/-
Rv0194/- (cc=0.5153) info on Rv0194/-
Rv1045/- (cc=0.4897) info on Rv1045/-
Rv2602/vapC41 (cc=0.4682) info on Rv2602/vapC41
Rv1263/amiB2 (cc=0.4636) info on Rv1263/amiB2
Rv0572c/- (cc=0.4501) info on Rv0572c/-

Correlation of Rv2077c/- with Rv0194/-

Normalized LFCs for Rv2077c/-:
(description and provenance of datasets)
Rv2077c/-Rv0194/-
Fe_supp_jason_reseq

-0.658

-0.058

low_pH_jason_reseq

-0.442

-0.393

NO_jason_reseq

0.249

0.037

B6_jason_reseq

0.26

-0.047

MHCII_jason_reseq

-0.431

-0.046

Isoniazid02

-0.18

-0.858

Rifampicin4

0.043

0.203

Ethambutol3

-0.505

-0.409

Meropenem3

-0.181

-1.028

Vancomycin16

-0.143

-0.464

Rv2680_day32

0.272

0.181

H37Rv_KO_MarP

0.113

0.456

hypoxia_3wks

0.355

0.056

hypoxia_6wks

0.198

0.115

glycerol

-0.357

0.0

cholesterol

-0.385

-0.104

AJ

0.161

0.111

Bibs02

0.465

0.0

Bibs02c

-0.064

0.035

BL6

0.336

0.133

BL6a

0.116

0.089

BXD01

-0.309

-0.121

BXD010

-0.019

0.049

BXD011

-0.142

0.049

BXD03

-0.295

-0.036

BXD04

-0.317

0.234

BXD05

-0.128

-0.11

BXD06

-0.031

0.076

BXD07

-0.215

0.159

BXD08

0.13

0.043

BXD09

0.032

-0.027

CAST

-0.367

0.067

CCcont

-0.148

-0.01

DS01

-0.195

-0.046

DS02

-0.243

0.071

DS04

0.195

0.056

DS0c

-0.556

0.481

GP01

0.514

0.584

GP02

0.626

0.367

GP0c

0.205

-0.07

NOD

-0.096

0.164

NZO

-0.101

0.498

PWK

0.409

0.266

H37Rv_KO_CtpC

0.304

0.053

H37Rv_KO_CtpD

0.53

1.262

H37Rv_KO_Rv1272

0.412

-0.274

H37Rv_KO_SugABC

0.799

0.454

H37Rv_KO_MbtN

0.307

0.423

Trans05

0.764

0.303

macrophage_unactivated

-0.06

-0.016

IL1

0.294

-0.131

Rapamycin

-0.325

-0.193

Tcell

-0.463

-0.339

GMCSF

-0.227

0.063

IFNab

0.042

0.115

IFNg

0.345

0.051

IFNg_GMCSF1

-0.544

0.148

Rv1432_day32

0.143

0.194

Rv1565c_day32

0.103

-0.469

secA2_input

0.158

0.025

delta_Rv3594

-0.323

-0.304

delta_Rv3717

-0.339

-0.214

delta_Rv3811

-0.03

-0.173

delta_Rv0954

0.388

-0.275

PonA1

0.055

-0.54

EccD1_KO

-0.464

-0.168

EspI_KO

-0.268

-0.362

PE35_KO

-1.024

-0.519

PPE68_KO

-0.819

-0.518

glycerol2

0.928

0.61

lignocerate

0.906

0.496

oleate

0.808

0.564

phosphatidylcholine

1.206

0.335

acetate

0.527

0.098

glucAc

0.385

-0.025

Rv0950ko

0.525

0.507

Rv1096ko

0.036

-0.341

Rv3684ko

0.393

0.0

delta_otsA_trehalose

0.628

-0.205