Top 10 genes with highest correlation to Rv2069/sigC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0096/PPE1 | (cc=0.8771) | info on Rv0096/PPE1 |
| Rv0097/- | (cc=0.826) | info on Rv0097/- |
| Rv0101/nrp | (cc=0.8125) | info on Rv0101/nrp |
| Rv0098/fcoT | (cc=0.7583) | info on Rv0098/fcoT |
| Rv0099/fadD10 | (cc=0.7462) | info on Rv0099/fadD10 |
| Rv0100/- | (cc=0.6773) | info on Rv0100/- |
| Rv1109c/- | (cc=0.6205) | info on Rv1109c/- |
| Rv3868/eccA1 | (cc=0.5906) | info on Rv3868/eccA1 |
| Rv1235/lpqY | (cc=0.5895) | info on Rv1235/lpqY |
| Rv3564/fadE33 | (cc=0.5677) | info on Rv3564/fadE33 |
Correlation of Rv2069/sigC with Rv1109c/-
Normalized LFCs for Rv2069/sigC:
(description and provenance of datasets)
| Rv2069/sigC | Rv1109c/- | |
| Fe_supp_jason_reseq | -0.128 | 0.666 |
| low_pH_jason_reseq | -0.119 | -0.069 |
| NO_jason_reseq | 0.462 | -0.837 |
| B6_jason_reseq | -2.033 | -1.372 |
| MHCII_jason_reseq | -3.645 | -0.925 |
| Isoniazid02 | -0.362 | 0.837 |
| Rifampicin4 | 0.309 | -0.636 |
| Ethambutol3 | -0.439 | 0.952 |
| Meropenem3 | -1.061 | 0.329 |
| Vancomycin16 | -0.47 | -0.576 |
| Rv2680_day32 | -2.541 | -0.461 |
| H37Rv_KO_MarP | -0.037 | -0.742 |
| hypoxia_3wks | -0.455 | 0.195 |
| hypoxia_6wks | -0.576 | 0.136 |
| glycerol | -0.085 | 0.983 |
| cholesterol | 0.617 | 0.101 |
| AJ | -5.946 | -2.681 |
| Bibs02 | -2.356 | -1.534 |
| Bibs02c | -0.18 | 0.681 |
| BL6 | -1.445 | 0.261 |
| BL6a | -1.238 | 0.676 |
| BXD01 | -1.302 | 0.339 |
| BXD010 | -1.236 | -0.31 |
| BXD011 | -1.081 | 1.074 |
| BXD03 | -1.843 | -0.722 |
| BXD04 | 0.16 | 0.409 |
| BXD05 | -1.081 | -0.671 |
| BXD06 | -2.687 | -0.229 |
| BXD07 | -1.013 | 0.272 |
| BXD08 | -1.029 | -0.029 |
| BXD09 | -1.683 | 0.189 |
| CAST | -5.119 | -2.611 |
| CCcont | 0.587 | 0.517 |
| DS01 | -1.305 | -0.347 |
| DS02 | 1.936 | 0.334 |
| DS04 | -2.282 | -1.448 |
| DS0c | -1.199 | -1.106 |
| GP01 | -1.777 | -0.426 |
| GP02 | -2.008 | -0.711 |
| GP0c | -0.301 | -0.268 |
| NOD | -3.642 | -2.319 |
| NZO | -5.46 | -1.946 |
| PWK | -4.735 | -2.693 |
| H37Rv_KO_CtpC | -1.144 | 0.091 |
| H37Rv_KO_CtpD | -0.641 | 1.105 |
| H37Rv_KO_Rv1272 | -0.508 | -0.608 |
| H37Rv_KO_SugABC | 0.098 | 0.393 |
| H37Rv_KO_MbtN | 0.242 | 0.285 |
| Trans05 | -0.834 | -0.353 |
| macrophage_unactivated | 1.657 | 1.25 |
| IL1 | -2.251 | 1.258 |
| Rapamycin | -1.697 | 0.506 |
| Tcell | -1.03 | 0.668 |
| GMCSF | 0.826 | 0.177 |
| IFNab | 3.217 | 0.599 |
| IFNg | 1.791 | 0.369 |
| IFNg_GMCSF1 | -0.666 | -0.559 |
| Rv1432_day32 | -3.819 | -2.095 |
| Rv1565c_day32 | -2.045 | -2.199 |
| secA2_input | -0.069 | 1.035 |
| delta_Rv3594 | -0.558 | 1.361 |
| delta_Rv3717 | 0.039 | 0.148 |
| delta_Rv3811 | -0.167 | 0.271 |
| delta_Rv0954 | 0.088 | 1.585 |
| PonA1 | -4.903 | 1.165 |
| EccD1_KO | 0.174 | 1.276 |
| EspI_KO | 0.319 | 0.234 |
| PE35_KO | 0.782 | 0.335 |
| PPE68_KO | 0.627 | 1.241 |
| glycerol2 | -3.511 | 0.154 |
| lignocerate | 1.103 | 0.024 |
| oleate | -2.823 | -0.295 |
| phosphatidylcholine | 0.182 | 0.567 |
| acetate | 0.258 | -0.263 |
| glucAc | 0.669 | -0.264 |
| Rv0950ko | -0.069 | 0.645 |
| Rv1096ko | -0.682 | 0.799 |
| Rv3684ko | -0.858 | -0.236 |
| delta_otsA_trehalose | 1.348 | 1.439 |