Top 10 genes with highest correlation to Rv2069/sigC:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0096/PPE1 | (cc=0.8771) | info on Rv0096/PPE1 |
| Rv0097/- | (cc=0.826) | info on Rv0097/- |
| Rv0101/nrp | (cc=0.8125) | info on Rv0101/nrp |
| Rv0098/fcoT | (cc=0.7583) | info on Rv0098/fcoT |
| Rv0099/fadD10 | (cc=0.7462) | info on Rv0099/fadD10 |
| Rv0100/- | (cc=0.6773) | info on Rv0100/- |
| Rv1109c/- | (cc=0.6205) | info on Rv1109c/- |
| Rv3868/eccA1 | (cc=0.5906) | info on Rv3868/eccA1 |
| Rv1235/lpqY | (cc=0.5895) | info on Rv1235/lpqY |
| Rv3564/fadE33 | (cc=0.5677) | info on Rv3564/fadE33 |
Correlation of Rv2069/sigC with Rv0097/-
Normalized LFCs for Rv2069/sigC:
(description and provenance of datasets)
| Rv2069/sigC | Rv0097/- | |
| Fe_supp_jason_reseq | -0.128 | 0.368 |
| low_pH_jason_reseq | -0.119 | 0.144 |
| NO_jason_reseq | 0.462 | 0.732 |
| B6_jason_reseq | -2.033 | -1.389 |
| MHCII_jason_reseq | -3.645 | -3.153 |
| Isoniazid02 | -0.362 | 0.063 |
| Rifampicin4 | 0.309 | 0.03 |
| Ethambutol3 | -0.439 | 0.052 |
| Meropenem3 | -1.061 | 0.859 |
| Vancomycin16 | -0.47 | 0.252 |
| Rv2680_day32 | -2.541 | -2.692 |
| H37Rv_KO_MarP | -0.037 | 0.72 |
| hypoxia_3wks | -0.455 | 0.391 |
| hypoxia_6wks | -0.576 | 0.242 |
| glycerol | -0.085 | 0.354 |
| cholesterol | 0.617 | -0.457 |
| AJ | -5.946 | -4.242 |
| Bibs02 | -2.356 | -0.948 |
| Bibs02c | -0.18 | -0.418 |
| BL6 | -1.445 | -0.306 |
| BL6a | -1.238 | -0.885 |
| BXD01 | -1.302 | -0.657 |
| BXD010 | -1.236 | -0.187 |
| BXD011 | -1.081 | -0.45 |
| BXD03 | -1.843 | -0.427 |
| BXD04 | 0.16 | 0.999 |
| BXD05 | -1.081 | -0.254 |
| BXD06 | -2.687 | -1.029 |
| BXD07 | -1.013 | -0.247 |
| BXD08 | -1.029 | -0.153 |
| BXD09 | -1.683 | -0.393 |
| CAST | -5.119 | -3.4 |
| CCcont | 0.587 | 0.425 |
| DS01 | -1.305 | 0.0 |
| DS02 | 1.936 | 2.086 |
| DS04 | -2.282 | -2.042 |
| DS0c | -1.199 | -0.25 |
| GP01 | -1.777 | -1.257 |
| GP02 | -2.008 | -1.566 |
| GP0c | -0.301 | -0.274 |
| NOD | -3.642 | -2.309 |
| NZO | -5.46 | -3.448 |
| PWK | -4.735 | -3.919 |
| H37Rv_KO_CtpC | -1.144 | -0.968 |
| H37Rv_KO_CtpD | -0.641 | 0.47 |
| H37Rv_KO_Rv1272 | -0.508 | -0.313 |
| H37Rv_KO_SugABC | 0.098 | 1.336 |
| H37Rv_KO_MbtN | 0.242 | 1.129 |
| Trans05 | -0.834 | 0.035 |
| macrophage_unactivated | 1.657 | 1.174 |
| IL1 | -2.251 | -1.243 |
| Rapamycin | -1.697 | -1.139 |
| Tcell | -1.03 | 0.896 |
| GMCSF | 0.826 | 0.958 |
| IFNab | 3.217 | 0.952 |
| IFNg | 1.791 | 0.219 |
| IFNg_GMCSF1 | -0.666 | 0.113 |
| Rv1432_day32 | -3.819 | -3.313 |
| Rv1565c_day32 | -2.045 | -3.3 |
| secA2_input | -0.069 | -0.498 |
| delta_Rv3594 | -0.558 | -0.268 |
| delta_Rv3717 | 0.039 | -0.518 |
| delta_Rv3811 | -0.167 | 0.18 |
| delta_Rv0954 | 0.088 | -0.435 |
| PonA1 | -4.903 | -3.519 |
| EccD1_KO | 0.174 | -0.52 |
| EspI_KO | 0.319 | -0.71 |
| PE35_KO | 0.782 | 0.047 |
| PPE68_KO | 0.627 | 0.051 |
| glycerol2 | -3.511 | 0.3 |
| lignocerate | 1.103 | 0.146 |
| oleate | -2.823 | 0.157 |
| phosphatidylcholine | 0.182 | 0.053 |
| acetate | 0.258 | 0.048 |
| glucAc | 0.669 | 0.843 |
| Rv0950ko | -0.069 | 0.597 |
| Rv1096ko | -0.682 | 0.483 |
| Rv3684ko | -0.858 | 0.111 |
| delta_otsA_trehalose | 1.348 | -0.25 |