Top 10 genes with highest correlation to Rv2040c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2274c/mazF8 | (cc=0.5681) | info on Rv2274c/mazF8 |
| Rv1954A/- | (cc=0.5504) | info on Rv1954A/- |
| Rv1430/PE16 | (cc=0.5072) | info on Rv1430/PE16 |
| Rv1980c/mpt64 | (cc=0.5032) | info on Rv1980c/mpt64 |
| Rv1561/vapC11 | (cc=0.5004) | info on Rv1561/vapC11 |
| Rv2500c/fadE19 | (cc=0.4949) | info on Rv2500c/fadE19 |
| Rv1526c/- | (cc=0.4938) | info on Rv1526c/- |
| Rv3669/- | (cc=0.4922) | info on Rv3669/- |
| Rv2481c/- | (cc=0.4885) | info on Rv2481c/- |
| Rv1896c/- | (cc=0.4875) | info on Rv1896c/- |
Correlation of Rv2040c/- with Rv1954A/-
Normalized LFCs for Rv2040c/-:
(description and provenance of datasets)
| Rv2040c/- | Rv1954A/- | |
| Fe_supp_jason_reseq | 0.032 | -0.051 |
| low_pH_jason_reseq | 0.291 | -0.878 |
| NO_jason_reseq | -0.399 | 0.795 |
| B6_jason_reseq | -0.415 | -1.023 |
| MHCII_jason_reseq | -1.451 | -0.98 |
| Isoniazid02 | -0.255 | 0.162 |
| Rifampicin4 | 0.252 | 0.699 |
| Ethambutol3 | -0.27 | -0.047 |
| Meropenem3 | -0.266 | 0.236 |
| Vancomycin16 | 0.247 | 0.034 |
| Rv2680_day32 | 0.687 | 0.267 |
| H37Rv_KO_MarP | -0.052 | 0.679 |
| hypoxia_3wks | 0.467 | -0.909 |
| hypoxia_6wks | -0.065 | -1.04 |
| glycerol | -0.23 | -1.412 |
| cholesterol | -0.378 | -1.382 |
| AJ | 0.513 | -0.906 |
| Bibs02 | -2.245 | -0.631 |
| Bibs02c | -1.391 | -0.423 |
| BL6 | 1.183 | 1.662 |
| BL6a | -0.03 | 0.082 |
| BXD01 | 0.84 | -0.17 |
| BXD010 | 0.656 | 0.235 |
| BXD011 | 2.53 | 0.376 |
| BXD03 | 0.755 | 1.021 |
| BXD04 | 0.091 | 0.345 |
| BXD05 | 0.598 | 1.009 |
| BXD06 | 0.328 | 0.464 |
| BXD07 | 0.042 | 0.734 |
| BXD08 | 0.118 | 0.663 |
| BXD09 | 0.87 | 0.683 |
| CAST | -0.425 | -0.352 |
| CCcont | 1.059 | -0.105 |
| DS01 | -1.131 | -0.441 |
| DS02 | -0.792 | -0.199 |
| DS04 | -0.468 | 0.049 |
| DS0c | -0.247 | -0.137 |
| GP01 | -0.601 | -0.69 |
| GP02 | -1.109 | 0.515 |
| GP0c | -0.865 | -0.193 |
| NOD | 0.76 | -0.351 |
| NZO | -0.727 | -1.113 |
| PWK | 0.06 | -0.756 |
| H37Rv_KO_CtpC | 0.567 | -0.545 |
| H37Rv_KO_CtpD | 0.039 | -0.004 |
| H37Rv_KO_Rv1272 | 1.84 | 1.449 |
| H37Rv_KO_SugABC | -0.918 | -2.115 |
| H37Rv_KO_MbtN | -0.421 | -1.266 |
| Trans05 | 1.52 | 0.628 |
| macrophage_unactivated | 0.325 | -0.174 |
| IL1 | 0.089 | -0.065 |
| Rapamycin | -0.046 | 0.7 |
| Tcell | 0.147 | 0.414 |
| GMCSF | 0.729 | 0.121 |
| IFNab | 0.091 | 0.78 |
| IFNg | -0.385 | 0.123 |
| IFNg_GMCSF1 | 0.826 | 1.084 |
| Rv1432_day32 | -0.415 | 0.746 |
| Rv1565c_day32 | -0.584 | -0.839 |
| secA2_input | -2.616 | -1.506 |
| delta_Rv3594 | 0.352 | 0.021 |
| delta_Rv3717 | 0.044 | 0.461 |
| delta_Rv3811 | 0.696 | -0.32 |
| delta_Rv0954 | -0.439 | -0.605 |
| PonA1 | 0.212 | -0.433 |
| EccD1_KO | 0.605 | 0.135 |
| EspI_KO | 0.727 | 0.713 |
| PE35_KO | 1.164 | 0.12 |
| PPE68_KO | 1.072 | 0.32 |
| glycerol2 | -0.273 | -0.046 |
| lignocerate | 0.012 | 0.557 |
| oleate | -0.597 | -0.437 |
| phosphatidylcholine | 0.193 | 0.246 |
| acetate | -0.032 | 0.256 |
| glucAc | 0.105 | 0.797 |
| Rv0950ko | -0.645 | -0.326 |
| Rv1096ko | -1.23 | -0.745 |
| Rv3684ko | -2.021 | -1.896 |
| delta_otsA_trehalose | -0.103 | -1.174 |