Top 10 genes with highest correlation to Rv2036/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2328/PE23 | (cc=0.533) | info on Rv2328/PE23 |
| Rv1734c/- | (cc=0.5211) | info on Rv1734c/- |
| Rv3170/aofH | (cc=0.5095) | info on Rv3170/aofH |
| Rv0687/- | (cc=0.5059) | info on Rv0687/- |
| Rv1963c/mce3R | (cc=0.5023) | info on Rv1963c/mce3R |
| Rv0433/- | (cc=0.5008) | info on Rv0433/- |
| Rv2014/- | (cc=0.4998) | info on Rv2014/- |
| Rv0571c/- | (cc=0.4983) | info on Rv0571c/- |
| Rv1956/higA | (cc=0.496) | info on Rv1956/higA |
| Rv1973/- | (cc=0.4941) | info on Rv1973/- |
Correlation of Rv2036/- with Rv1963c/mce3R
Normalized LFCs for Rv2036/-:
(description and provenance of datasets)
| Rv2036/- | Rv1963c/mce3R | |
| Fe_supp_jason_reseq | -0.549 | -0.74 |
| low_pH_jason_reseq | -0.179 | -0.069 |
| NO_jason_reseq | -0.914 | -0.567 |
| B6_jason_reseq | 0.759 | 0.044 |
| MHCII_jason_reseq | 0.789 | 0.876 |
| Isoniazid02 | -0.627 | -0.514 |
| Rifampicin4 | 1.186 | 1.064 |
| Ethambutol3 | -0.343 | 0.827 |
| Meropenem3 | 0.159 | 0.27 |
| Vancomycin16 | 0.297 | 0.395 |
| Rv2680_day32 | -1.564 | -0.554 |
| H37Rv_KO_MarP | -0.157 | -0.236 |
| hypoxia_3wks | 0.0 | -1.739 |
| hypoxia_6wks | 0.0 | -1.837 |
| glycerol | -2.266 | 0.19 |
| cholesterol | -1.742 | -2.14 |
| AJ | 0.595 | -1.0 |
| Bibs02 | 1.636 | -0.603 |
| Bibs02c | -3.116 | -0.532 |
| BL6 | -2.702 | -1.472 |
| BL6a | -2.646 | -1.274 |
| BXD01 | -2.091 | -2.266 |
| BXD010 | -1.21 | -0.35 |
| BXD011 | -2.212 | -1.445 |
| BXD03 | -2.663 | -1.652 |
| BXD04 | -1.168 | -2.063 |
| BXD05 | -0.484 | -1.706 |
| BXD06 | -1.783 | -1.692 |
| BXD07 | -1.021 | -2.046 |
| BXD08 | -2.22 | -2.219 |
| BXD09 | -1.877 | -0.797 |
| CAST | -1.408 | -2.017 |
| CCcont | -2.593 | 0.322 |
| DS01 | -0.298 | -1.848 |
| DS02 | 0.057 | -1.701 |
| DS04 | -2.999 | -1.148 |
| DS0c | -0.148 | -0.889 |
| GP01 | -1.229 | -1.967 |
| GP02 | -1.797 | -1.582 |
| GP0c | -1.936 | -0.98 |
| NOD | -0.283 | -0.415 |
| NZO | -0.406 | -0.818 |
| PWK | -0.705 | -1.655 |
| H37Rv_KO_CtpC | -1.113 | -1.712 |
| H37Rv_KO_CtpD | -2.29 | -1.437 |
| H37Rv_KO_Rv1272 | -0.765 | -0.907 |
| H37Rv_KO_SugABC | -1.791 | -0.538 |
| H37Rv_KO_MbtN | 0.601 | -0.32 |
| Trans05 | -0.422 | -0.741 |
| macrophage_unactivated | -1.708 | -1.36 |
| IL1 | -2.231 | -1.875 |
| Rapamycin | -3.069 | -2.167 |
| Tcell | -1.551 | -1.613 |
| GMCSF | -0.51 | -1.138 |
| IFNab | -0.907 | -0.29 |
| IFNg | -1.109 | -1.502 |
| IFNg_GMCSF1 | -0.77 | -1.986 |
| Rv1432_day32 | -0.43 | -1.356 |
| Rv1565c_day32 | 0.0 | -1.275 |
| secA2_input | -1.498 | -0.366 |
| delta_Rv3594 | 2.839 | 0.766 |
| delta_Rv3717 | 2.382 | 0.135 |
| delta_Rv3811 | 2.552 | 1.09 |
| delta_Rv0954 | 0.249 | -0.088 |
| PonA1 | -1.235 | 0.171 |
| EccD1_KO | -1.033 | -1.253 |
| EspI_KO | -0.787 | -1.668 |
| PE35_KO | -0.093 | 0.621 |
| PPE68_KO | -0.419 | 0.323 |
| glycerol2 | -0.95 | -1.868 |
| lignocerate | -0.826 | -1.83 |
| oleate | -0.767 | -2.504 |
| phosphatidylcholine | -0.758 | -1.867 |
| acetate | -0.499 | 0.851 |
| glucAc | 0.333 | 0.758 |
| Rv0950ko | 0.0 | -0.172 |
| Rv1096ko | -1.855 | -0.998 |
| Rv3684ko | -1.588 | -0.717 |
| delta_otsA_trehalose | 0.208 | -0.248 |