Top 10 genes with highest correlation to Rv1996/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2865/relF | (cc=0.5506) | info on Rv2865/relF |
| Rv1753c/PPE24 | (cc=0.5334) | info on Rv1753c/PPE24 |
| Rv2806/- | (cc=0.5175) | info on Rv2806/- |
| Rv2246/kasB | (cc=0.496) | info on Rv2246/kasB |
| Rv2231c/cobC | (cc=0.4869) | info on Rv2231c/cobC |
| Rv0862c/- | (cc=0.4855) | info on Rv0862c/- |
| Rv0049/- | (cc=0.4731) | info on Rv0049/- |
| Rv2299c/htpG | (cc=0.4712) | info on Rv2299c/htpG |
| Rv0866/moaE2 | (cc=0.4631) | info on Rv0866/moaE2 |
| Rv2724c/fadE20 | (cc=0.4598) | info on Rv2724c/fadE20 |
Correlation of Rv1996/- with Rv2246/kasB
Normalized LFCs for Rv1996/-:
(description and provenance of datasets)
| Rv1996/- | Rv2246/kasB | |
| Fe_supp_jason_reseq | -0.134 | 0.766 |
| low_pH_jason_reseq | -0.254 | 0.0 |
| NO_jason_reseq | 0.176 | 0.0 |
| B6_jason_reseq | 0.208 | 0.0 |
| MHCII_jason_reseq | 0.085 | 0.0 |
| Isoniazid02 | -1.052 | -0.119 |
| Rifampicin4 | -0.42 | -1.922 |
| Ethambutol3 | -1.014 | -0.711 |
| Meropenem3 | -0.618 | -0.701 |
| Vancomycin16 | -0.812 | -1.884 |
| Rv2680_day32 | -0.73 | 0.0 |
| H37Rv_KO_MarP | -0.073 | -1.984 |
| hypoxia_3wks | -0.056 | 0.55 |
| hypoxia_6wks | 0.34 | 0.549 |
| glycerol | -0.097 | 0.0 |
| cholesterol | -0.393 | 0.0 |
| AJ | 0.208 | 0.0 |
| Bibs02 | 0.174 | 0.0 |
| Bibs02c | -0.05 | 0.0 |
| BL6 | 0.383 | 0.0 |
| BL6a | 0.482 | 0.198 |
| BXD01 | -0.178 | 0.13 |
| BXD010 | 0.37 | 0.0 |
| BXD011 | 1.465 | 0.0 |
| BXD03 | 1.255 | 0.0 |
| BXD04 | 0.601 | 0.0 |
| BXD05 | 0.664 | 0.135 |
| BXD06 | 0.343 | 0.0 |
| BXD07 | 0.124 | 0.68 |
| BXD08 | 0.235 | 0.0 |
| BXD09 | 0.62 | 0.268 |
| CAST | 0.105 | 0.0 |
| CCcont | -0.08 | 1.366 |
| DS01 | 0.286 | 0.0 |
| DS02 | 0.638 | 0.0 |
| DS04 | 0.62 | 0.682 |
| DS0c | 0.297 | 0.0 |
| GP01 | -0.632 | 0.0 |
| GP02 | -1.583 | 0.0 |
| GP0c | -0.949 | 0.0 |
| NOD | -0.308 | 0.0 |
| NZO | 0.629 | 0.0 |
| PWK | 0.165 | 0.0 |
| H37Rv_KO_CtpC | -0.358 | 0.162 |
| H37Rv_KO_CtpD | -1.134 | 0.127 |
| H37Rv_KO_Rv1272 | 0.527 | 0.0 |
| H37Rv_KO_SugABC | 0.403 | 0.487 |
| H37Rv_KO_MbtN | 0.364 | 0.633 |
| Trans05 | 0.117 | 0.0 |
| macrophage_unactivated | 0.382 | -0.363 |
| IL1 | -0.323 | 0.317 |
| Rapamycin | 0.236 | -0.74 |
| Tcell | -0.283 | -0.785 |
| GMCSF | 0.507 | 0.0 |
| IFNab | -0.263 | 0.323 |
| IFNg | 0.083 | 0.286 |
| IFNg_GMCSF1 | -0.676 | 0.647 |
| Rv1432_day32 | -0.089 | 0.0 |
| Rv1565c_day32 | 0.734 | 0.0 |
| secA2_input | 0.238 | 2.243 |
| delta_Rv3594 | 1.282 | 3.841 |
| delta_Rv3717 | 1.063 | 3.949 |
| delta_Rv3811 | 1.386 | 1.878 |
| delta_Rv0954 | 0.813 | 3.517 |
| PonA1 | 1.343 | 0.0 |
| EccD1_KO | -0.704 | -4.177 |
| EspI_KO | -0.04 | -2.205 |
| PE35_KO | 0.041 | -0.913 |
| PPE68_KO | -0.48 | -0.23 |
| glycerol2 | -0.556 | 0.0 |
| lignocerate | -0.415 | 0.0 |
| oleate | -0.027 | 0.0 |
| phosphatidylcholine | -0.499 | 0.0 |
| acetate | -0.579 | 0.0 |
| glucAc | -0.236 | 0.0 |
| Rv0950ko | -0.6 | -3.242 |
| Rv1096ko | -1.3 | -4.931 |
| Rv3684ko | -0.452 | -0.783 |
| delta_otsA_trehalose | 0.197 | 0.0 |