Top 10 genes with highest correlation to Rv1996/-:
update plot | correlation | link to info on gene |
---|---|---|
Rv2865/relF | (cc=0.5506) | info on Rv2865/relF |
Rv1753c/PPE24 | (cc=0.5334) | info on Rv1753c/PPE24 |
Rv2806/- | (cc=0.5175) | info on Rv2806/- |
Rv2246/kasB | (cc=0.496) | info on Rv2246/kasB |
Rv2231c/cobC | (cc=0.4869) | info on Rv2231c/cobC |
Rv0862c/- | (cc=0.4855) | info on Rv0862c/- |
Rv0049/- | (cc=0.4731) | info on Rv0049/- |
Rv2299c/htpG | (cc=0.4712) | info on Rv2299c/htpG |
Rv0866/moaE2 | (cc=0.4631) | info on Rv0866/moaE2 |
Rv2724c/fadE20 | (cc=0.4598) | info on Rv2724c/fadE20 |
Correlation of Rv1996/- with Rv2865/relF
Normalized LFCs for Rv1996/-:
(description and provenance of datasets)
Rv1996/- | Rv2865/relF | |
Fe_supp_jason_reseq | -0.134 | 0.036 |
low_pH_jason_reseq | -0.254 | -0.353 |
NO_jason_reseq | 0.176 | 0.641 |
B6_jason_reseq | 0.208 | -0.052 |
MHCII_jason_reseq | 0.085 | -0.012 |
Isoniazid02 | -1.052 | -3.936 |
Rifampicin4 | -0.42 | 0.56 |
Ethambutol3 | -1.014 | -3.694 |
Meropenem3 | -0.618 | -3.71 |
Vancomycin16 | -0.812 | -1.157 |
Rv2680_day32 | -0.73 | 1.134 |
H37Rv_KO_MarP | -0.073 | 0.697 |
hypoxia_3wks | -0.056 | 0.14 |
hypoxia_6wks | 0.34 | 0.347 |
glycerol | -0.097 | -1.521 |
cholesterol | -0.393 | -1.07 |
AJ | 0.208 | -1.714 |
Bibs02 | 0.174 | -2.649 |
Bibs02c | -0.05 | -0.477 |
BL6 | 0.383 | 1.273 |
BL6a | 0.482 | 0.948 |
BXD01 | -0.178 | -0.442 |
BXD010 | 0.37 | 1.873 |
BXD011 | 1.465 | 1.22 |
BXD03 | 1.255 | 0.245 |
BXD04 | 0.601 | 0.842 |
BXD05 | 0.664 | 1.027 |
BXD06 | 0.343 | 0.201 |
BXD07 | 0.124 | 0.843 |
BXD08 | 0.235 | -0.048 |
BXD09 | 0.62 | 1.067 |
CAST | 0.105 | -0.185 |
CCcont | -0.08 | 0.633 |
DS01 | 0.286 | -0.645 |
DS02 | 0.638 | -1.801 |
DS04 | 0.62 | -1.97 |
DS0c | 0.297 | -0.11 |
GP01 | -0.632 | -0.065 |
GP02 | -1.583 | -1.016 |
GP0c | -0.949 | 0.332 |
NOD | -0.308 | 1.91 |
NZO | 0.629 | -0.146 |
PWK | 0.165 | -0.571 |
H37Rv_KO_CtpC | -0.358 | 0.285 |
H37Rv_KO_CtpD | -1.134 | 0.33 |
H37Rv_KO_Rv1272 | 0.527 | 0.288 |
H37Rv_KO_SugABC | 0.403 | 1.604 |
H37Rv_KO_MbtN | 0.364 | 1.113 |
Trans05 | 0.117 | 0.942 |
macrophage_unactivated | 0.382 | -1.335 |
IL1 | -0.323 | 0.756 |
Rapamycin | 0.236 | -0.114 |
Tcell | -0.283 | 0.274 |
GMCSF | 0.507 | 0.084 |
IFNab | -0.263 | -0.544 |
IFNg | 0.083 | 0.823 |
IFNg_GMCSF1 | -0.676 | 0.374 |
Rv1432_day32 | -0.089 | -0.164 |
Rv1565c_day32 | 0.734 | 0.0 |
secA2_input | 0.238 | 0.163 |
delta_Rv3594 | 1.282 | 4.483 |
delta_Rv3717 | 1.063 | 4.268 |
delta_Rv3811 | 1.386 | 4.653 |
delta_Rv0954 | 0.813 | 4.184 |
PonA1 | 1.343 | 3.704 |
EccD1_KO | -0.704 | 1.506 |
EspI_KO | -0.04 | 0.445 |
PE35_KO | 0.041 | 0.604 |
PPE68_KO | -0.48 | -0.39 |
glycerol2 | -0.556 | -0.909 |
lignocerate | -0.415 | -0.47 |
oleate | -0.027 | -0.756 |
phosphatidylcholine | -0.499 | -0.65 |
acetate | -0.579 | 0.063 |
glucAc | -0.236 | -1.127 |
Rv0950ko | -0.6 | -1.058 |
Rv1096ko | -1.3 | -1.52 |
Rv3684ko | -0.452 | -1.831 |
delta_otsA_trehalose | 0.197 | 1.719 |