TnSeqCorr

Top 10 genes with highest correlation to Rv1996/-:

update plotcorrelationlink to info on gene
Rv2865/relF (cc=0.5506) info on Rv2865/relF
Rv1753c/PPE24 (cc=0.5334) info on Rv1753c/PPE24
Rv2806/- (cc=0.5175) info on Rv2806/-
Rv2246/kasB (cc=0.496) info on Rv2246/kasB
Rv2231c/cobC (cc=0.4869) info on Rv2231c/cobC
Rv0862c/- (cc=0.4855) info on Rv0862c/-
Rv0049/- (cc=0.4731) info on Rv0049/-
Rv2299c/htpG (cc=0.4712) info on Rv2299c/htpG
Rv0866/moaE2 (cc=0.4631) info on Rv0866/moaE2
Rv2724c/fadE20 (cc=0.4598) info on Rv2724c/fadE20

Correlation of Rv1996/- with Rv2865/relF

Normalized LFCs for Rv1996/-:
(description and provenance of datasets)
Rv1996/-Rv2865/relF
Fe_supp_jason_reseq

-0.134

0.036

low_pH_jason_reseq

-0.254

-0.353

NO_jason_reseq

0.176

0.641

B6_jason_reseq

0.208

-0.052

MHCII_jason_reseq

0.085

-0.012

Isoniazid02

-1.052

-3.936

Rifampicin4

-0.42

0.56

Ethambutol3

-1.014

-3.694

Meropenem3

-0.618

-3.71

Vancomycin16

-0.812

-1.157

Rv2680_day32

-0.73

1.134

H37Rv_KO_MarP

-0.073

0.697

hypoxia_3wks

-0.056

0.14

hypoxia_6wks

0.34

0.347

glycerol

-0.097

-1.521

cholesterol

-0.393

-1.07

AJ

0.208

-1.714

Bibs02

0.174

-2.649

Bibs02c

-0.05

-0.477

BL6

0.383

1.273

BL6a

0.482

0.948

BXD01

-0.178

-0.442

BXD010

0.37

1.873

BXD011

1.465

1.22

BXD03

1.255

0.245

BXD04

0.601

0.842

BXD05

0.664

1.027

BXD06

0.343

0.201

BXD07

0.124

0.843

BXD08

0.235

-0.048

BXD09

0.62

1.067

CAST

0.105

-0.185

CCcont

-0.08

0.633

DS01

0.286

-0.645

DS02

0.638

-1.801

DS04

0.62

-1.97

DS0c

0.297

-0.11

GP01

-0.632

-0.065

GP02

-1.583

-1.016

GP0c

-0.949

0.332

NOD

-0.308

1.91

NZO

0.629

-0.146

PWK

0.165

-0.571

H37Rv_KO_CtpC

-0.358

0.285

H37Rv_KO_CtpD

-1.134

0.33

H37Rv_KO_Rv1272

0.527

0.288

H37Rv_KO_SugABC

0.403

1.604

H37Rv_KO_MbtN

0.364

1.113

Trans05

0.117

0.942

macrophage_unactivated

0.382

-1.335

IL1

-0.323

0.756

Rapamycin

0.236

-0.114

Tcell

-0.283

0.274

GMCSF

0.507

0.084

IFNab

-0.263

-0.544

IFNg

0.083

0.823

IFNg_GMCSF1

-0.676

0.374

Rv1432_day32

-0.089

-0.164

Rv1565c_day32

0.734

0.0

secA2_input

0.238

0.163

delta_Rv3594

1.282

4.483

delta_Rv3717

1.063

4.268

delta_Rv3811

1.386

4.653

delta_Rv0954

0.813

4.184

PonA1

1.343

3.704

EccD1_KO

-0.704

1.506

EspI_KO

-0.04

0.445

PE35_KO

0.041

0.604

PPE68_KO

-0.48

-0.39

glycerol2

-0.556

-0.909

lignocerate

-0.415

-0.47

oleate

-0.027

-0.756

phosphatidylcholine

-0.499

-0.65

acetate

-0.579

0.063

glucAc

-0.236

-1.127

Rv0950ko

-0.6

-1.058

Rv1096ko

-1.3

-1.52

Rv3684ko

-0.452

-1.831

delta_otsA_trehalose

0.197

1.719