Top 10 genes with highest correlation to Rv1982A/vapB36:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1806/PE20 | (cc=0.5115) | info on Rv1806/PE20 |
| Rv2966c/- | (cc=0.4529) | info on Rv2966c/- |
| Rv0150c/- | (cc=0.4494) | info on Rv0150c/- |
| Rv3392c/cmaA1 | (cc=0.4465) | info on Rv3392c/cmaA1 |
| Rv2366c/- | (cc=0.4448) | info on Rv2366c/- |
| Rv2270/lppN | (cc=0.4241) | info on Rv2270/lppN |
| Rv2213/pepB | (cc=0.4236) | info on Rv2213/pepB |
| Rv1003/- | (cc=0.4221) | info on Rv1003/- |
| Rv1079/metB | (cc=0.411) | info on Rv1079/metB |
| Rv0553/menC | (cc=0.408) | info on Rv0553/menC |
Correlation of Rv1982A/vapB36 with Rv2966c/-
Normalized LFCs for Rv1982A/vapB36:
(description and provenance of datasets)
| Rv1982A/vapB36 | Rv2966c/- | |
| Fe_supp_jason_reseq | -0.066 | 2.671 |
| low_pH_jason_reseq | -0.338 | -0.634 |
| NO_jason_reseq | -1.221 | 0.0 |
| B6_jason_reseq | -0.334 | -0.421 |
| MHCII_jason_reseq | -2.353 | -0.236 |
| Isoniazid02 | -0.112 | 1.011 |
| Rifampicin4 | 0.322 | -0.309 |
| Ethambutol3 | -0.652 | -0.795 |
| Meropenem3 | -0.156 | -3.068 |
| Vancomycin16 | 0.0 | -1.785 |
| Rv2680_day32 | -0.476 | 0.359 |
| H37Rv_KO_MarP | -0.219 | -1.82 |
| hypoxia_3wks | -0.929 | -0.478 |
| hypoxia_6wks | 0.299 | -1.539 |
| glycerol | 0.149 | 2.126 |
| cholesterol | 1.618 | 1.371 |
| AJ | -0.896 | -0.919 |
| Bibs02 | -3.315 | -0.878 |
| Bibs02c | 1.685 | -0.376 |
| BL6 | -0.456 | -0.839 |
| BL6a | 1.175 | -0.112 |
| BXD01 | -0.793 | -0.874 |
| BXD010 | 0.644 | -0.859 |
| BXD011 | -1.698 | -0.505 |
| BXD03 | -0.786 | 0.072 |
| BXD04 | -0.623 | -0.222 |
| BXD05 | 0.81 | -0.533 |
| BXD06 | -0.926 | -0.426 |
| BXD07 | -0.065 | -0.929 |
| BXD08 | -0.884 | -0.892 |
| BXD09 | -0.452 | -0.557 |
| CAST | -0.889 | -0.913 |
| CCcont | -1.761 | 1.63 |
| DS01 | -2.676 | -0.133 |
| DS02 | -2.017 | -1.045 |
| DS04 | -0.358 | 1.296 |
| DS0c | 0.251 | -1.042 |
| GP01 | -1.707 | -0.662 |
| GP02 | -0.87 | -0.558 |
| GP0c | -2.054 | -0.872 |
| NOD | -0.97 | 1.434 |
| NZO | -0.727 | -1.139 |
| PWK | -0.223 | -0.942 |
| H37Rv_KO_CtpC | -0.859 | -0.292 |
| H37Rv_KO_CtpD | -1.915 | 0.068 |
| H37Rv_KO_Rv1272 | -1.663 | -0.559 |
| H37Rv_KO_SugABC | 0.517 | 0.364 |
| H37Rv_KO_MbtN | 0.547 | 2.759 |
| Trans05 | 0.996 | -0.151 |
| macrophage_unactivated | 0.0 | 0.701 |
| IL1 | -3.776 | -0.78 |
| Rapamycin | 0.365 | 0.239 |
| Tcell | -1.518 | 0.0 |
| GMCSF | -1.611 | -0.217 |
| IFNab | 0.496 | 1.255 |
| IFNg | 0.556 | -0.97 |
| IFNg_GMCSF1 | -0.496 | -0.534 |
| Rv1432_day32 | -1.918 | -0.763 |
| Rv1565c_day32 | 0.0 | -0.269 |
| secA2_input | -0.412 | -0.902 |
| delta_Rv3594 | 3.292 | 4.026 |
| delta_Rv3717 | 0.365 | 3.729 |
| delta_Rv3811 | 1.603 | 2.919 |
| delta_Rv0954 | 1.942 | 2.362 |
| PonA1 | -0.979 | 0.56 |
| EccD1_KO | 0.937 | 0.98 |
| EspI_KO | 0.359 | 0.85 |
| PE35_KO | -0.753 | 0.98 |
| PPE68_KO | 0.166 | 1.795 |
| glycerol2 | -2.221 | -2.287 |
| lignocerate | -1.846 | -1.527 |
| oleate | -1.723 | -1.484 |
| phosphatidylcholine | -1.86 | -1.606 |
| acetate | -1.887 | -0.078 |
| glucAc | -2.207 | -0.81 |
| Rv0950ko | -0.081 | 0.256 |
| Rv1096ko | -0.808 | 0.0 |
| Rv3684ko | 0.344 | -1.248 |
| delta_otsA_trehalose | 0.807 | -0.232 |