Top 10 genes with highest correlation to Rv1920/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1871c/- | (cc=0.5532) | info on Rv1871c/- |
| Rv1800/PPE28 | (cc=0.4866) | info on Rv1800/PPE28 |
| Rv1850/ureC | (cc=0.4828) | info on Rv1850/ureC |
| Rv0845/- | (cc=0.4632) | info on Rv0845/- |
| Rv2778c/- | (cc=0.4519) | info on Rv2778c/- |
| Rv2435c/- | (cc=0.448) | info on Rv2435c/- |
| Rv0867c/rpfA | (cc=0.4344) | info on Rv0867c/rpfA |
| Rv2274c/mazF8 | (cc=0.424) | info on Rv2274c/mazF8 |
| Rv2584c/apt | (cc=0.4226) | info on Rv2584c/apt |
| Rv2038c/- | (cc=0.4208) | info on Rv2038c/- |
Correlation of Rv1920/- with Rv2584c/apt
Normalized LFCs for Rv1920/-:
(description and provenance of datasets)
| Rv1920/- | Rv2584c/apt | |
| Fe_supp_jason_reseq | -1.601 | -0.227 |
| low_pH_jason_reseq | -0.201 | 0.565 |
| NO_jason_reseq | -0.383 | 0.404 |
| B6_jason_reseq | -0.487 | -0.929 |
| MHCII_jason_reseq | -1.332 | -1.215 |
| Isoniazid02 | -0.061 | -0.808 |
| Rifampicin4 | 0.217 | -0.146 |
| Ethambutol3 | -0.094 | -0.59 |
| Meropenem3 | 0.294 | -0.443 |
| Vancomycin16 | -0.093 | -0.268 |
| Rv2680_day32 | -0.545 | 0.892 |
| H37Rv_KO_MarP | -0.207 | -0.556 |
| hypoxia_3wks | 0.658 | 0.738 |
| hypoxia_6wks | 0.791 | 1.046 |
| glycerol | -0.581 | 0.758 |
| cholesterol | -0.301 | -0.069 |
| AJ | 0.687 | 0.81 |
| Bibs02 | 0.062 | 1.106 |
| Bibs02c | -0.174 | 0.932 |
| BL6 | -0.135 | 0.958 |
| BL6a | 0.276 | 1.499 |
| BXD01 | -0.271 | 0.868 |
| BXD010 | 0.139 | 1.16 |
| BXD011 | 0.064 | 0.701 |
| BXD03 | -0.096 | 1.101 |
| BXD04 | -0.014 | 1.281 |
| BXD05 | 0.06 | 1.845 |
| BXD06 | 0.102 | 1.349 |
| BXD07 | 0.331 | 1.389 |
| BXD08 | 0.123 | 1.048 |
| BXD09 | 0.216 | 1.278 |
| CAST | 0.202 | 0.576 |
| CCcont | -0.487 | 1.444 |
| DS01 | 0.169 | 0.274 |
| DS02 | -0.194 | 0.12 |
| DS04 | -0.298 | -0.471 |
| DS0c | -0.063 | 0.511 |
| GP01 | 1.29 | 0.774 |
| GP02 | -0.999 | 0.966 |
| GP0c | -0.62 | 1.337 |
| NOD | -0.628 | -0.042 |
| NZO | 0.988 | 0.407 |
| PWK | -0.594 | 0.658 |
| H37Rv_KO_CtpC | 0.241 | 0.281 |
| H37Rv_KO_CtpD | 0.851 | 1.793 |
| H37Rv_KO_Rv1272 | 1.096 | 1.014 |
| H37Rv_KO_SugABC | -0.058 | 1.26 |
| H37Rv_KO_MbtN | 0.832 | 0.707 |
| Trans05 | 0.825 | 1.018 |
| macrophage_unactivated | 1.146 | 0.619 |
| IL1 | -0.021 | 0.697 |
| Rapamycin | 0.043 | 0.893 |
| Tcell | -0.3 | 0.228 |
| GMCSF | 1.001 | 2.017 |
| IFNab | 0.396 | 0.931 |
| IFNg | 0.925 | -0.013 |
| IFNg_GMCSF1 | 0.393 | 0.264 |
| Rv1432_day32 | 0.267 | 0.374 |
| Rv1565c_day32 | 0.438 | 0.041 |
| secA2_input | -1.273 | -1.75 |
| delta_Rv3594 | -0.035 | 0.347 |
| delta_Rv3717 | 0.216 | -0.422 |
| delta_Rv3811 | 0.0 | -0.207 |
| delta_Rv0954 | -0.801 | -0.433 |
| PonA1 | -0.298 | -0.406 |
| EccD1_KO | -0.418 | -0.977 |
| EspI_KO | -0.168 | -0.436 |
| PE35_KO | -0.128 | -0.688 |
| PPE68_KO | 0.643 | -0.611 |
| glycerol2 | 0.377 | 0.378 |
| lignocerate | 0.188 | 0.226 |
| oleate | 0.302 | 0.55 |
| phosphatidylcholine | 0.751 | 0.378 |
| acetate | -0.048 | 0.484 |
| glucAc | -0.178 | -0.133 |
| Rv0950ko | -1.279 | -0.703 |
| Rv1096ko | -1.224 | -0.401 |
| Rv3684ko | -1.035 | -1.117 |
| delta_otsA_trehalose | 1.142 | -0.167 |