Top 10 genes with highest correlation to Rv1920/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1871c/- | (cc=0.5532) | info on Rv1871c/- |
| Rv1800/PPE28 | (cc=0.4866) | info on Rv1800/PPE28 |
| Rv1850/ureC | (cc=0.4828) | info on Rv1850/ureC |
| Rv0845/- | (cc=0.4632) | info on Rv0845/- |
| Rv2778c/- | (cc=0.4519) | info on Rv2778c/- |
| Rv2435c/- | (cc=0.448) | info on Rv2435c/- |
| Rv0867c/rpfA | (cc=0.4344) | info on Rv0867c/rpfA |
| Rv2274c/mazF8 | (cc=0.424) | info on Rv2274c/mazF8 |
| Rv2584c/apt | (cc=0.4226) | info on Rv2584c/apt |
| Rv2038c/- | (cc=0.4208) | info on Rv2038c/- |
Correlation of Rv1920/- with Rv1871c/-
Normalized LFCs for Rv1920/-:
(description and provenance of datasets)
| Rv1920/- | Rv1871c/- | |
| Fe_supp_jason_reseq | -1.601 | -0.912 |
| low_pH_jason_reseq | -0.201 | -0.53 |
| NO_jason_reseq | -0.383 | 0.473 |
| B6_jason_reseq | -0.487 | -1.258 |
| MHCII_jason_reseq | -1.332 | -1.425 |
| Isoniazid02 | -0.061 | 1.439 |
| Rifampicin4 | 0.217 | 0.479 |
| Ethambutol3 | -0.094 | 0.428 |
| Meropenem3 | 0.294 | 0.461 |
| Vancomycin16 | -0.093 | 0.456 |
| Rv2680_day32 | -0.545 | -0.682 |
| H37Rv_KO_MarP | -0.207 | -0.285 |
| hypoxia_3wks | 0.658 | 0.75 |
| hypoxia_6wks | 0.791 | 0.073 |
| glycerol | -0.581 | -0.992 |
| cholesterol | -0.301 | -0.324 |
| AJ | 0.687 | -0.239 |
| Bibs02 | 0.062 | -0.36 |
| Bibs02c | -0.174 | -1.199 |
| BL6 | -0.135 | -0.055 |
| BL6a | 0.276 | -0.277 |
| BXD01 | -0.271 | -0.095 |
| BXD010 | 0.139 | 0.395 |
| BXD011 | 0.064 | 0.603 |
| BXD03 | -0.096 | -0.029 |
| BXD04 | -0.014 | -0.269 |
| BXD05 | 0.06 | 0.71 |
| BXD06 | 0.102 | 0.057 |
| BXD07 | 0.331 | 0.007 |
| BXD08 | 0.123 | 0.157 |
| BXD09 | 0.216 | -0.145 |
| CAST | 0.202 | 0.37 |
| CCcont | -0.487 | -0.471 |
| DS01 | 0.169 | -0.039 |
| DS02 | -0.194 | -0.501 |
| DS04 | -0.298 | -0.177 |
| DS0c | -0.063 | -0.277 |
| GP01 | 1.29 | 1.05 |
| GP02 | -0.999 | 0.11 |
| GP0c | -0.62 | 0.703 |
| NOD | -0.628 | 0.485 |
| NZO | 0.988 | -0.688 |
| PWK | -0.594 | -0.604 |
| H37Rv_KO_CtpC | 0.241 | 0.112 |
| H37Rv_KO_CtpD | 0.851 | 0.495 |
| H37Rv_KO_Rv1272 | 1.096 | 0.893 |
| H37Rv_KO_SugABC | -0.058 | 0.349 |
| H37Rv_KO_MbtN | 0.832 | 1.584 |
| Trans05 | 0.825 | 0.698 |
| macrophage_unactivated | 1.146 | 0.625 |
| IL1 | -0.021 | -0.403 |
| Rapamycin | 0.043 | 0.476 |
| Tcell | -0.3 | -0.345 |
| GMCSF | 1.001 | 0.869 |
| IFNab | 0.396 | 0.686 |
| IFNg | 0.925 | -0.168 |
| IFNg_GMCSF1 | 0.393 | 0.292 |
| Rv1432_day32 | 0.267 | -0.485 |
| Rv1565c_day32 | 0.438 | -0.009 |
| secA2_input | -1.273 | -0.994 |
| delta_Rv3594 | -0.035 | -1.137 |
| delta_Rv3717 | 0.216 | -1.158 |
| delta_Rv3811 | 0.0 | -0.758 |
| delta_Rv0954 | -0.801 | -0.908 |
| PonA1 | -0.298 | -1.138 |
| EccD1_KO | -0.418 | -0.306 |
| EspI_KO | -0.168 | 0.915 |
| PE35_KO | -0.128 | -0.184 |
| PPE68_KO | 0.643 | -0.074 |
| glycerol2 | 0.377 | 0.265 |
| lignocerate | 0.188 | -0.578 |
| oleate | 0.302 | 0.698 |
| phosphatidylcholine | 0.751 | 0.37 |
| acetate | -0.048 | -0.836 |
| glucAc | -0.178 | -1.325 |
| Rv0950ko | -1.279 | -0.874 |
| Rv1096ko | -1.224 | -1.378 |
| Rv3684ko | -1.035 | -0.707 |
| delta_otsA_trehalose | 1.142 | 0.11 |