Top 10 genes with highest correlation to Rv1887/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2197c/- | (cc=0.7622) | info on Rv2197c/- |
| Rv0007/- | (cc=0.6066) | info on Rv0007/- |
| Rv3630/- | (cc=0.5803) | info on Rv3630/- |
| Rv0129c/fbpC | (cc=0.5564) | info on Rv0129c/fbpC |
| Rv3682/ponA2 | (cc=0.5289) | info on Rv3682/ponA2 |
| Rv3790/dprE1 | (cc=0.5236) | info on Rv3790/dprE1 |
| Rv0999/- | (cc=0.5055) | info on Rv0999/- |
| Rv1101c/- | (cc=0.49) | info on Rv1101c/- |
| Rv2171/lppM | (cc=0.4838) | info on Rv2171/lppM |
| Rv1411c/lprG | (cc=0.4773) | info on Rv1411c/lprG |
Correlation of Rv1887/- with Rv3682/ponA2
Normalized LFCs for Rv1887/-:
(description and provenance of datasets)
| Rv1887/- | Rv3682/ponA2 | |
| Fe_supp_jason_reseq | 0.897 | 2.333 |
| low_pH_jason_reseq | 0.405 | 0.862 |
| NO_jason_reseq | -0.627 | 0.735 |
| B6_jason_reseq | 1.156 | -0.246 |
| MHCII_jason_reseq | 0.311 | 0.189 |
| Isoniazid02 | 0.036 | -0.941 |
| Rifampicin4 | -3.287 | -6.0 |
| Ethambutol3 | -0.603 | 0.383 |
| Meropenem3 | -1.264 | -4.704 |
| Vancomycin16 | -2.881 | -6.0 |
| Rv2680_day32 | 0.613 | -1.468 |
| H37Rv_KO_MarP | -0.062 | 2.554 |
| hypoxia_3wks | 0.63 | -3.118 |
| hypoxia_6wks | 0.781 | -2.159 |
| glycerol | 0.181 | 0.054 |
| cholesterol | -0.11 | 0.315 |
| AJ | 0.269 | -1.388 |
| Bibs02 | 0.438 | 0.356 |
| Bibs02c | -0.55 | 0.671 |
| BL6 | 0.06 | -0.809 |
| BL6a | 0.047 | 0.053 |
| BXD01 | -0.016 | -1.496 |
| BXD010 | -0.006 | -1.577 |
| BXD011 | 0.211 | -0.592 |
| BXD03 | -0.056 | -0.875 |
| BXD04 | -0.047 | -1.42 |
| BXD05 | 0.043 | -1.087 |
| BXD06 | -0.344 | -1.533 |
| BXD07 | 0.166 | -1.383 |
| BXD08 | 0.31 | -1.424 |
| BXD09 | 0.238 | -1.614 |
| CAST | -0.289 | -2.644 |
| CCcont | -0.37 | 2.728 |
| DS01 | -0.672 | -1.528 |
| DS02 | -0.701 | -1.301 |
| DS04 | -0.748 | -0.6 |
| DS0c | -0.303 | 1.051 |
| GP01 | 1.109 | 0.527 |
| GP02 | -0.052 | -0.775 |
| GP0c | 0.586 | -0.659 |
| NOD | -0.103 | -1.814 |
| NZO | 0.699 | -1.731 |
| PWK | -1.358 | -2.416 |
| H37Rv_KO_CtpC | -0.242 | 0.703 |
| H37Rv_KO_CtpD | 0.849 | -0.392 |
| H37Rv_KO_Rv1272 | 0.87 | -1.409 |
| H37Rv_KO_SugABC | 0.741 | 0.769 |
| H37Rv_KO_MbtN | -0.083 | 0.201 |
| Trans05 | 0.392 | -0.782 |
| macrophage_unactivated | -0.53 | 1.016 |
| IL1 | -0.16 | -0.572 |
| Rapamycin | 0.101 | 0.353 |
| Tcell | -1.065 | -1.098 |
| GMCSF | -0.557 | -0.161 |
| IFNab | 0.239 | 0.973 |
| IFNg | 0.075 | -0.901 |
| IFNg_GMCSF1 | 0.163 | -0.396 |
| Rv1432_day32 | 0.369 | -0.763 |
| Rv1565c_day32 | 2.993 | 6.0 |
| secA2_input | -0.903 | 1.645 |
| delta_Rv3594 | 0.546 | 1.034 |
| delta_Rv3717 | 0.545 | -0.876 |
| delta_Rv3811 | 0.235 | 0.193 |
| delta_Rv0954 | 0.407 | 1.442 |
| PonA1 | 0.006 | -4.498 |
| EccD1_KO | -0.25 | -2.434 |
| EspI_KO | -0.337 | -1.891 |
| PE35_KO | -0.438 | -1.006 |
| PPE68_KO | -0.429 | 0.573 |
| glycerol2 | -0.133 | -2.071 |
| lignocerate | -0.269 | -1.006 |
| oleate | 0.306 | -3.116 |
| phosphatidylcholine | -0.265 | -2.3 |
| acetate | -0.437 | 0.595 |
| glucAc | 0.022 | 0.056 |
| Rv0950ko | 0.389 | -0.591 |
| Rv1096ko | -0.443 | -3.553 |
| Rv3684ko | -0.059 | 1.136 |
| delta_otsA_trehalose | -0.892 | -0.184 |