Top 10 genes with highest correlation to Rv1887/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2197c/- | (cc=0.7622) | info on Rv2197c/- |
| Rv0007/- | (cc=0.6066) | info on Rv0007/- |
| Rv3630/- | (cc=0.5803) | info on Rv3630/- |
| Rv0129c/fbpC | (cc=0.5564) | info on Rv0129c/fbpC |
| Rv3682/ponA2 | (cc=0.5289) | info on Rv3682/ponA2 |
| Rv3790/dprE1 | (cc=0.5236) | info on Rv3790/dprE1 |
| Rv0999/- | (cc=0.5055) | info on Rv0999/- |
| Rv1101c/- | (cc=0.49) | info on Rv1101c/- |
| Rv2171/lppM | (cc=0.4838) | info on Rv2171/lppM |
| Rv1411c/lprG | (cc=0.4773) | info on Rv1411c/lprG |
Correlation of Rv1887/- with Rv0999/-
Normalized LFCs for Rv1887/-:
(description and provenance of datasets)
| Rv1887/- | Rv0999/- | |
| Fe_supp_jason_reseq | 0.897 | 1.07 |
| low_pH_jason_reseq | 0.405 | -2.859 |
| NO_jason_reseq | -0.627 | -0.79 |
| B6_jason_reseq | 1.156 | -0.668 |
| MHCII_jason_reseq | 0.311 | -0.177 |
| Isoniazid02 | 0.036 | -1.18 |
| Rifampicin4 | -3.287 | -6.0 |
| Ethambutol3 | -0.603 | -3.222 |
| Meropenem3 | -1.264 | -3.835 |
| Vancomycin16 | -2.881 | -6.0 |
| Rv2680_day32 | 0.613 | -0.811 |
| H37Rv_KO_MarP | -0.062 | -0.865 |
| hypoxia_3wks | 0.63 | 0.056 |
| hypoxia_6wks | 0.781 | -0.307 |
| glycerol | 0.181 | 0.398 |
| cholesterol | -0.11 | 2.859 |
| AJ | 0.269 | -0.871 |
| Bibs02 | 0.438 | 0.925 |
| Bibs02c | -0.55 | -0.083 |
| BL6 | 0.06 | -1.211 |
| BL6a | 0.047 | -1.322 |
| BXD01 | -0.016 | -0.918 |
| BXD010 | -0.006 | -1.239 |
| BXD011 | 0.211 | 1.126 |
| BXD03 | -0.056 | -0.489 |
| BXD04 | -0.047 | -0.673 |
| BXD05 | 0.043 | -0.396 |
| BXD06 | -0.344 | -0.748 |
| BXD07 | 0.166 | -0.58 |
| BXD08 | 0.31 | -0.659 |
| BXD09 | 0.238 | -0.395 |
| CAST | -0.289 | -1.957 |
| CCcont | -0.37 | 0.991 |
| DS01 | -0.672 | -0.546 |
| DS02 | -0.701 | 0.429 |
| DS04 | -0.748 | -0.266 |
| DS0c | -0.303 | -0.396 |
| GP01 | 1.109 | 0.574 |
| GP02 | -0.052 | 1.568 |
| GP0c | 0.586 | 0.445 |
| NOD | -0.103 | -0.975 |
| NZO | 0.699 | -1.608 |
| PWK | -1.358 | -0.602 |
| H37Rv_KO_CtpC | -0.242 | 0.918 |
| H37Rv_KO_CtpD | 0.849 | 1.633 |
| H37Rv_KO_Rv1272 | 0.87 | -0.146 |
| H37Rv_KO_SugABC | 0.741 | 1.311 |
| H37Rv_KO_MbtN | -0.083 | -0.317 |
| Trans05 | 0.392 | -0.733 |
| macrophage_unactivated | -0.53 | 0.458 |
| IL1 | -0.16 | 0.608 |
| Rapamycin | 0.101 | 1.903 |
| Tcell | -1.065 | -1.082 |
| GMCSF | -0.557 | 0.584 |
| IFNab | 0.239 | 1.224 |
| IFNg | 0.075 | 0.051 |
| IFNg_GMCSF1 | 0.163 | 0.845 |
| Rv1432_day32 | 0.369 | -1.785 |
| Rv1565c_day32 | 2.993 | -0.815 |
| secA2_input | -0.903 | -0.437 |
| delta_Rv3594 | 0.546 | 1.088 |
| delta_Rv3717 | 0.545 | 0.487 |
| delta_Rv3811 | 0.235 | 0.77 |
| delta_Rv0954 | 0.407 | 0.674 |
| PonA1 | 0.006 | 0.188 |
| EccD1_KO | -0.25 | -0.789 |
| EspI_KO | -0.337 | 0.1 |
| PE35_KO | -0.438 | 0.137 |
| PPE68_KO | -0.429 | 0.189 |
| glycerol2 | -0.133 | -0.747 |
| lignocerate | -0.269 | -2.208 |
| oleate | 0.306 | -0.855 |
| phosphatidylcholine | -0.265 | -1.288 |
| acetate | -0.437 | -0.497 |
| glucAc | 0.022 | -2.262 |
| Rv0950ko | 0.389 | -1.601 |
| Rv1096ko | -0.443 | -0.989 |
| Rv3684ko | -0.059 | -1.189 |
| delta_otsA_trehalose | -0.892 | -0.862 |