Top 10 genes with highest correlation to Rv1853/ureD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3390/lpqD | (cc=0.3735) | info on Rv3390/lpqD |
| Rv2685/arsB1 | (cc=0.3672) | info on Rv2685/arsB1 |
| Rv1964/yrbE3A | (cc=0.3657) | info on Rv1964/yrbE3A |
| Rv2024c/- | (cc=0.3631) | info on Rv2024c/- |
| Rv1816/- | (cc=0.3511) | info on Rv1816/- |
| Rv1130/prpD | (cc=0.3415) | info on Rv1130/prpD |
| Rv1785c/cyp143 | (cc=0.3315) | info on Rv1785c/cyp143 |
| Rv3310/sapM | (cc=0.3297) | info on Rv3310/sapM |
| Rv0348/- | (cc=0.3293) | info on Rv0348/- |
| Rv3016/lpqA | (cc=0.3273) | info on Rv3016/lpqA |
Correlation of Rv1853/ureD with Rv2024c/-
Normalized LFCs for Rv1853/ureD:
(description and provenance of datasets)
| Rv1853/ureD | Rv2024c/- | |
| Fe_supp_jason_reseq | -0.17 | -0.268 |
| low_pH_jason_reseq | -2.928 | -0.554 |
| NO_jason_reseq | 0.2 | -0.265 |
| B6_jason_reseq | -2.148 | -0.723 |
| MHCII_jason_reseq | -0.327 | -0.243 |
| Isoniazid02 | 0.595 | 0.159 |
| Rifampicin4 | -0.504 | 0.133 |
| Ethambutol3 | 0.089 | 0.966 |
| Meropenem3 | 0.444 | 0.255 |
| Vancomycin16 | 0.316 | 0.109 |
| Rv2680_day32 | 1.313 | 0.387 |
| H37Rv_KO_MarP | 1.01 | -0.018 |
| hypoxia_3wks | -0.929 | 0.068 |
| hypoxia_6wks | -1.455 | -0.244 |
| glycerol | -2.008 | -0.638 |
| cholesterol | -0.922 | 1.221 |
| AJ | -1.477 | -0.419 |
| Bibs02 | -0.25 | 0.309 |
| Bibs02c | -0.668 | -0.318 |
| BL6 | -1.745 | 0.135 |
| BL6a | 0.24 | -0.382 |
| BXD01 | 0.427 | -0.188 |
| BXD010 | -0.175 | 0.338 |
| BXD011 | -0.727 | -0.096 |
| BXD03 | 0.369 | 0.046 |
| BXD04 | -0.746 | 0.066 |
| BXD05 | 0.227 | 0.366 |
| BXD06 | -0.805 | -0.235 |
| BXD07 | -0.132 | -0.227 |
| BXD08 | -0.639 | -0.186 |
| BXD09 | 0.147 | -0.191 |
| CAST | -0.853 | -0.551 |
| CCcont | -1.286 | -0.031 |
| DS01 | -1.205 | -0.267 |
| DS02 | 0.531 | -0.616 |
| DS04 | -2.707 | -0.507 |
| DS0c | -0.486 | -0.577 |
| GP01 | 0.471 | 0.209 |
| GP02 | -1.43 | 0.143 |
| GP0c | -0.262 | -0.147 |
| NOD | -1.146 | -0.607 |
| NZO | -2.783 | -0.584 |
| PWK | 0.139 | 0.266 |
| H37Rv_KO_CtpC | 1.597 | 0.16 |
| H37Rv_KO_CtpD | -1.26 | 0.275 |
| H37Rv_KO_Rv1272 | 2.606 | 0.759 |
| H37Rv_KO_SugABC | -0.535 | 0.751 |
| H37Rv_KO_MbtN | -1.183 | 0.555 |
| Trans05 | 1.548 | 0.659 |
| macrophage_unactivated | -1.105 | -0.129 |
| IL1 | -1.373 | 0.632 |
| Rapamycin | -1.074 | 0.516 |
| Tcell | -0.485 | 0.593 |
| GMCSF | 1.666 | 1.104 |
| IFNab | -0.45 | 0.695 |
| IFNg | 1.382 | 0.628 |
| IFNg_GMCSF1 | 0.735 | 1.153 |
| Rv1432_day32 | 0.0 | 0.155 |
| Rv1565c_day32 | 0.161 | 0.079 |
| secA2_input | 0.562 | -0.822 |
| delta_Rv3594 | -0.997 | 0.011 |
| delta_Rv3717 | 0.116 | -0.408 |
| delta_Rv3811 | 0.73 | 0.321 |
| delta_Rv0954 | 0.474 | -0.35 |
| PonA1 | -0.689 | -0.025 |
| EccD1_KO | 0.306 | -0.039 |
| EspI_KO | -0.285 | 0.351 |
| PE35_KO | -0.248 | 0.286 |
| PPE68_KO | 0.214 | 0.336 |
| glycerol2 | -1.131 | 0.808 |
| lignocerate | 0.035 | 0.96 |
| oleate | -0.574 | 0.537 |
| phosphatidylcholine | 0.041 | 0.831 |
| acetate | 0.564 | 0.66 |
| glucAc | 0.856 | 0.453 |
| Rv0950ko | -1.619 | 0.422 |
| Rv1096ko | 0.582 | -0.407 |
| Rv3684ko | -0.868 | -0.029 |
| delta_otsA_trehalose | 0.877 | 0.244 |