Top 10 genes with highest correlation to Rv1853/ureD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3390/lpqD | (cc=0.3735) | info on Rv3390/lpqD |
| Rv2685/arsB1 | (cc=0.3672) | info on Rv2685/arsB1 |
| Rv1964/yrbE3A | (cc=0.3657) | info on Rv1964/yrbE3A |
| Rv2024c/- | (cc=0.3631) | info on Rv2024c/- |
| Rv1816/- | (cc=0.3511) | info on Rv1816/- |
| Rv1130/prpD | (cc=0.3415) | info on Rv1130/prpD |
| Rv1785c/cyp143 | (cc=0.3315) | info on Rv1785c/cyp143 |
| Rv3310/sapM | (cc=0.3297) | info on Rv3310/sapM |
| Rv0348/- | (cc=0.3293) | info on Rv0348/- |
| Rv3016/lpqA | (cc=0.3273) | info on Rv3016/lpqA |
Correlation of Rv1853/ureD with Rv1816/-
Normalized LFCs for Rv1853/ureD:
(description and provenance of datasets)
| Rv1853/ureD | Rv1816/- | |
| Fe_supp_jason_reseq | -0.17 | -1.036 |
| low_pH_jason_reseq | -2.928 | -1.098 |
| NO_jason_reseq | 0.2 | -0.286 |
| B6_jason_reseq | -2.148 | -0.699 |
| MHCII_jason_reseq | -0.327 | -2.165 |
| Isoniazid02 | 0.595 | 1.592 |
| Rifampicin4 | -0.504 | 0.336 |
| Ethambutol3 | 0.089 | 1.629 |
| Meropenem3 | 0.444 | 1.416 |
| Vancomycin16 | 0.316 | -0.117 |
| Rv2680_day32 | 1.313 | -0.323 |
| H37Rv_KO_MarP | 1.01 | 0.264 |
| hypoxia_3wks | -0.929 | 0.112 |
| hypoxia_6wks | -1.455 | 0.058 |
| glycerol | -2.008 | -0.601 |
| cholesterol | -0.922 | 0.664 |
| AJ | -1.477 | -0.343 |
| Bibs02 | -0.25 | 0.616 |
| Bibs02c | -0.668 | -0.27 |
| BL6 | -1.745 | 0.778 |
| BL6a | 0.24 | 0.446 |
| BXD01 | 0.427 | 0.319 |
| BXD010 | -0.175 | 0.329 |
| BXD011 | -0.727 | 0.821 |
| BXD03 | 0.369 | 0.447 |
| BXD04 | -0.746 | 0.31 |
| BXD05 | 0.227 | 1.023 |
| BXD06 | -0.805 | 0.666 |
| BXD07 | -0.132 | 0.33 |
| BXD08 | -0.639 | 0.367 |
| BXD09 | 0.147 | 0.464 |
| CAST | -0.853 | -0.115 |
| CCcont | -1.286 | -0.14 |
| DS01 | -1.205 | 0.038 |
| DS02 | 0.531 | -0.948 |
| DS04 | -2.707 | -0.943 |
| DS0c | -0.486 | 0.201 |
| GP01 | 0.471 | 0.792 |
| GP02 | -1.43 | 0.198 |
| GP0c | -0.262 | 0.511 |
| NOD | -1.146 | -0.055 |
| NZO | -2.783 | -0.616 |
| PWK | 0.139 | 0.637 |
| H37Rv_KO_CtpC | 1.597 | 0.498 |
| H37Rv_KO_CtpD | -1.26 | 1.05 |
| H37Rv_KO_Rv1272 | 2.606 | 1.264 |
| H37Rv_KO_SugABC | -0.535 | -0.758 |
| H37Rv_KO_MbtN | -1.183 | 0.488 |
| Trans05 | 1.548 | 0.988 |
| macrophage_unactivated | -1.105 | 0.202 |
| IL1 | -1.373 | -0.409 |
| Rapamycin | -1.074 | 0.267 |
| Tcell | -0.485 | 0.182 |
| GMCSF | 1.666 | 0.23 |
| IFNab | -0.45 | -0.281 |
| IFNg | 1.382 | 0.15 |
| IFNg_GMCSF1 | 0.735 | 0.713 |
| Rv1432_day32 | 0.0 | -0.016 |
| Rv1565c_day32 | 0.161 | 0.185 |
| secA2_input | 0.562 | 0.158 |
| delta_Rv3594 | -0.997 | -0.366 |
| delta_Rv3717 | 0.116 | 0.035 |
| delta_Rv3811 | 0.73 | 0.162 |
| delta_Rv0954 | 0.474 | 0.045 |
| PonA1 | -0.689 | -0.335 |
| EccD1_KO | 0.306 | 0.826 |
| EspI_KO | -0.285 | 1.095 |
| PE35_KO | -0.248 | 0.303 |
| PPE68_KO | 0.214 | 0.48 |
| glycerol2 | -1.131 | -0.265 |
| lignocerate | 0.035 | -0.309 |
| oleate | -0.574 | 0.065 |
| phosphatidylcholine | 0.041 | 0.09 |
| acetate | 0.564 | -0.422 |
| glucAc | 0.856 | -0.485 |
| Rv0950ko | -1.619 | 0.814 |
| Rv1096ko | 0.582 | 0.353 |
| Rv3684ko | -0.868 | -0.514 |
| delta_otsA_trehalose | 0.877 | 0.084 |