Top 10 genes with highest correlation to Rv1780/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1058/fadD14 | (cc=0.7465) | info on Rv1058/fadD14 |
| Rv0502/- | (cc=0.7318) | info on Rv0502/- |
| Rv0642c/mmaA4 | (cc=0.7224) | info on Rv0642c/mmaA4 |
| Rv0425c/ctpH | (cc=0.7118) | info on Rv0425c/ctpH |
| Rv0211/pckA | (cc=0.7053) | info on Rv0211/pckA |
| Rv1543/- | (cc=0.7002) | info on Rv1543/- |
| Rv2131c/cysQ | (cc=0.6965) | info on Rv2131c/cysQ |
| Rv0644c/mmaA2 | (cc=0.6878) | info on Rv0644c/mmaA2 |
| Rv3050c/- | (cc=0.6707) | info on Rv3050c/- |
| Rv0238/- | (cc=0.6695) | info on Rv0238/- |
Correlation of Rv1780/- with Rv3050c/-
Normalized LFCs for Rv1780/-:
(description and provenance of datasets)
| Rv1780/- | Rv3050c/- | |
| Fe_supp_jason_reseq | -1.778 | -1.053 |
| low_pH_jason_reseq | -0.34 | 1.193 |
| NO_jason_reseq | -2.084 | 0.522 |
| B6_jason_reseq | -3.549 | -2.547 |
| MHCII_jason_reseq | -0.977 | -1.955 |
| Isoniazid02 | 2.506 | -0.063 |
| Rifampicin4 | -0.639 | -2.594 |
| Ethambutol3 | 1.978 | -0.612 |
| Meropenem3 | 0.727 | -0.918 |
| Vancomycin16 | -0.491 | -1.496 |
| Rv2680_day32 | 1.835 | 1.932 |
| H37Rv_KO_MarP | -0.267 | 0.906 |
| hypoxia_3wks | 1.288 | 1.611 |
| hypoxia_6wks | 3.454 | 2.7 |
| glycerol | 2.188 | 1.104 |
| cholesterol | 2.714 | -0.098 |
| AJ | -0.768 | 0.541 |
| Bibs02 | 1.197 | 0.115 |
| Bibs02c | 1.17 | 0.258 |
| BL6 | 1.216 | 2.934 |
| BL6a | 1.807 | 4.475 |
| BXD01 | 2.028 | 3.241 |
| BXD010 | 1.29 | 3.787 |
| BXD011 | 3.362 | 5.572 |
| BXD03 | 1.659 | 3.365 |
| BXD04 | 2.619 | 2.343 |
| BXD05 | 1.815 | 3.473 |
| BXD06 | 3.056 | 3.983 |
| BXD07 | 1.865 | 3.042 |
| BXD08 | 1.959 | 3.65 |
| BXD09 | 2.253 | 4.687 |
| CAST | -1.922 | -0.501 |
| CCcont | 0.954 | 2.452 |
| DS01 | 0.435 | -0.926 |
| DS02 | -1.03 | -0.852 |
| DS04 | 0.232 | 2.503 |
| DS0c | 0.74 | 0.616 |
| GP01 | 2.552 | 3.843 |
| GP02 | 2.909 | 1.738 |
| GP0c | 2.635 | 3.849 |
| NOD | -1.01 | -0.151 |
| NZO | -0.123 | -0.433 |
| PWK | -1.451 | -0.274 |
| H37Rv_KO_CtpC | 1.377 | 1.177 |
| H37Rv_KO_CtpD | -0.826 | 1.634 |
| H37Rv_KO_Rv1272 | 1.908 | 3.492 |
| H37Rv_KO_SugABC | 2.077 | 4.142 |
| H37Rv_KO_MbtN | 3.96 | 2.344 |
| Trans05 | 2.432 | 4.016 |
| macrophage_unactivated | -0.189 | 0.063 |
| IL1 | -1.264 | 0.291 |
| Rapamycin | -0.85 | 1.019 |
| Tcell | 2.444 | 2.255 |
| GMCSF | -1.009 | -0.573 |
| IFNab | 0.641 | 0.599 |
| IFNg | -1.732 | -1.227 |
| IFNg_GMCSF1 | -3.126 | -0.61 |
| Rv1432_day32 | 2.211 | 5.592 |
| Rv1565c_day32 | 1.35 | 0.458 |
| secA2_input | -1.45 | 0.321 |
| delta_Rv3594 | 1.334 | 1.42 |
| delta_Rv3717 | 2.956 | 3.259 |
| delta_Rv3811 | 1.866 | 0.932 |
| delta_Rv0954 | -1.335 | -1.765 |
| PonA1 | -2.652 | -1.855 |
| EccD1_KO | -2.993 | -2.072 |
| EspI_KO | -2.21 | -3.274 |
| PE35_KO | -2.634 | -1.613 |
| PPE68_KO | -2.102 | -1.261 |
| glycerol2 | 0.483 | -3.636 |
| lignocerate | 0.36 | -2.568 |
| oleate | 0.034 | -3.374 |
| phosphatidylcholine | 0.653 | -3.892 |
| acetate | -0.374 | -1.584 |
| glucAc | -0.518 | -0.723 |
| Rv0950ko | -2.783 | -0.874 |
| Rv1096ko | -3.685 | -1.384 |
| Rv3684ko | -2.731 | 1.952 |
| delta_otsA_trehalose | -1.034 | -0.519 |