Top 10 genes with highest correlation to Rv1780/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1058/fadD14 | (cc=0.7465) | info on Rv1058/fadD14 |
| Rv0502/- | (cc=0.7318) | info on Rv0502/- |
| Rv0642c/mmaA4 | (cc=0.7224) | info on Rv0642c/mmaA4 |
| Rv0425c/ctpH | (cc=0.7118) | info on Rv0425c/ctpH |
| Rv0211/pckA | (cc=0.7053) | info on Rv0211/pckA |
| Rv1543/- | (cc=0.7002) | info on Rv1543/- |
| Rv2131c/cysQ | (cc=0.6965) | info on Rv2131c/cysQ |
| Rv0644c/mmaA2 | (cc=0.6878) | info on Rv0644c/mmaA2 |
| Rv3050c/- | (cc=0.6707) | info on Rv3050c/- |
| Rv0238/- | (cc=0.6695) | info on Rv0238/- |
Correlation of Rv1780/- with Rv0642c/mmaA4
Normalized LFCs for Rv1780/-:
(description and provenance of datasets)
| Rv1780/- | Rv0642c/mmaA4 | |
| Fe_supp_jason_reseq | -1.778 | 1.547 |
| low_pH_jason_reseq | -0.34 | 2.202 |
| NO_jason_reseq | -2.084 | 2.678 |
| B6_jason_reseq | -3.549 | -2.886 |
| MHCII_jason_reseq | -0.977 | -1.687 |
| Isoniazid02 | 2.506 | -1.333 |
| Rifampicin4 | -0.639 | -1.565 |
| Ethambutol3 | 1.978 | -2.112 |
| Meropenem3 | 0.727 | -1.815 |
| Vancomycin16 | -0.491 | -6.0 |
| Rv2680_day32 | 1.835 | -0.359 |
| H37Rv_KO_MarP | -0.267 | 0.571 |
| hypoxia_3wks | 1.288 | -0.937 |
| hypoxia_6wks | 3.454 | 3.548 |
| glycerol | 2.188 | 1.556 |
| cholesterol | 2.714 | -0.145 |
| AJ | -0.768 | 0.585 |
| Bibs02 | 1.197 | 0.717 |
| Bibs02c | 1.17 | 2.877 |
| BL6 | 1.216 | 2.544 |
| BL6a | 1.807 | 3.946 |
| BXD01 | 2.028 | 4.224 |
| BXD010 | 1.29 | 4.186 |
| BXD011 | 3.362 | 6.0 |
| BXD03 | 1.659 | 4.026 |
| BXD04 | 2.619 | 3.598 |
| BXD05 | 1.815 | 4.7 |
| BXD06 | 3.056 | 5.627 |
| BXD07 | 1.865 | 4.784 |
| BXD08 | 1.959 | 5.896 |
| BXD09 | 2.253 | 4.223 |
| CAST | -1.922 | -0.23 |
| CCcont | 0.954 | 5.608 |
| DS01 | 0.435 | -0.236 |
| DS02 | -1.03 | -0.217 |
| DS04 | 0.232 | 2.617 |
| DS0c | 0.74 | -0.217 |
| GP01 | 2.552 | 6.0 |
| GP02 | 2.909 | 3.274 |
| GP0c | 2.635 | 6.0 |
| NOD | -1.01 | 0.0 |
| NZO | -0.123 | -0.199 |
| PWK | -1.451 | 0.342 |
| H37Rv_KO_CtpC | 1.377 | 4.153 |
| H37Rv_KO_CtpD | -0.826 | 1.805 |
| H37Rv_KO_Rv1272 | 1.908 | 4.035 |
| H37Rv_KO_SugABC | 2.077 | 1.362 |
| H37Rv_KO_MbtN | 3.96 | 6.0 |
| Trans05 | 2.432 | 4.713 |
| macrophage_unactivated | -0.189 | -3.595 |
| IL1 | -1.264 | 0.297 |
| Rapamycin | -0.85 | -0.706 |
| Tcell | 2.444 | -0.124 |
| GMCSF | -1.009 | -3.126 |
| IFNab | 0.641 | -0.883 |
| IFNg | -1.732 | -4.153 |
| IFNg_GMCSF1 | -3.126 | -5.477 |
| Rv1432_day32 | 2.211 | -0.98 |
| Rv1565c_day32 | 1.35 | -1.21 |
| secA2_input | -1.45 | 0.424 |
| delta_Rv3594 | 1.334 | 1.768 |
| delta_Rv3717 | 2.956 | 3.284 |
| delta_Rv3811 | 1.866 | 1.646 |
| delta_Rv0954 | -1.335 | -2.158 |
| PonA1 | -2.652 | -6.0 |
| EccD1_KO | -2.993 | -6.0 |
| EspI_KO | -2.21 | -6.0 |
| PE35_KO | -2.634 | -6.0 |
| PPE68_KO | -2.102 | -6.0 |
| glycerol2 | 0.483 | -1.684 |
| lignocerate | 0.36 | -1.464 |
| oleate | 0.034 | -1.167 |
| phosphatidylcholine | 0.653 | -1.683 |
| acetate | -0.374 | -1.561 |
| glucAc | -0.518 | -0.451 |
| Rv0950ko | -2.783 | -3.98 |
| Rv1096ko | -3.685 | -3.906 |
| Rv3684ko | -2.731 | -1.628 |
| delta_otsA_trehalose | -1.034 | -0.595 |