Top 10 genes with highest correlation to Rv1772/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1964/yrbE3A | (cc=0.4517) | info on Rv1964/yrbE3A |
| Rv1892/- | (cc=0.4144) | info on Rv1892/- |
| Rv0057/- | (cc=0.4116) | info on Rv0057/- |
| Rv3618/- | (cc=0.4083) | info on Rv3618/- |
| Rv0364/- | (cc=0.4051) | info on Rv0364/- |
| Rv2789c/fadE21 | (cc=0.4042) | info on Rv2789c/fadE21 |
| Rv2480c/- | (cc=0.4005) | info on Rv2480c/- |
| Rv2495c/bkdC | (cc=0.4001) | info on Rv2495c/bkdC |
| Rv0222/echA1 | (cc=0.3902) | info on Rv0222/echA1 |
| Rv1720c/vapC12 | (cc=0.3862) | info on Rv1720c/vapC12 |
Correlation of Rv1772/- with Rv2495c/bkdC
Normalized LFCs for Rv1772/-:
(description and provenance of datasets)
| Rv1772/- | Rv2495c/bkdC | |
| Fe_supp_jason_reseq | -3.334 | -5.05 |
| low_pH_jason_reseq | -1.822 | -5.352 |
| NO_jason_reseq | -0.68 | 0.252 |
| B6_jason_reseq | -2.688 | -2.921 |
| MHCII_jason_reseq | -3.659 | -2.608 |
| Isoniazid02 | 0.354 | 0.333 |
| Rifampicin4 | -1.543 | -1.652 |
| Ethambutol3 | 1.497 | -0.332 |
| Meropenem3 | 0.973 | -0.061 |
| Vancomycin16 | 0.154 | 0.0 |
| Rv2680_day32 | -0.828 | -0.168 |
| H37Rv_KO_MarP | -0.799 | 0.769 |
| hypoxia_3wks | -1.049 | 0.263 |
| hypoxia_6wks | -1.138 | 0.069 |
| glycerol | -1.546 | -0.628 |
| cholesterol | 0.384 | 0.684 |
| AJ | 0.65 | -0.914 |
| Bibs02 | 0.107 | -1.495 |
| Bibs02c | 0.082 | 0.735 |
| BL6 | 1.146 | -0.869 |
| BL6a | 1.551 | 0.973 |
| BXD01 | -0.501 | 0.0 |
| BXD010 | -1.496 | -0.622 |
| BXD011 | 0.099 | 0.448 |
| BXD03 | 0.851 | 1.318 |
| BXD04 | -0.668 | 0.78 |
| BXD05 | 1.785 | 0.078 |
| BXD06 | -0.967 | 0.441 |
| BXD07 | 0.345 | -0.375 |
| BXD08 | -0.911 | 0.702 |
| BXD09 | -0.18 | 0.232 |
| CAST | -0.295 | -0.537 |
| CCcont | -0.49 | -0.797 |
| DS01 | -0.527 | 0.204 |
| DS02 | 2.083 | 0.52 |
| DS04 | 0.603 | 1.159 |
| DS0c | -1.752 | 1.538 |
| GP01 | 0.307 | 0.085 |
| GP02 | -1.275 | -0.797 |
| GP0c | -1.109 | -0.903 |
| NOD | 3.695 | -0.986 |
| NZO | -0.256 | -0.186 |
| PWK | 1.421 | 0.222 |
| H37Rv_KO_CtpC | 1.419 | 0.5 |
| H37Rv_KO_CtpD | -1.405 | 0.333 |
| H37Rv_KO_Rv1272 | 0.0 | 0.434 |
| H37Rv_KO_SugABC | -1.22 | -0.877 |
| H37Rv_KO_MbtN | 2.598 | -0.32 |
| Trans05 | -1.609 | 1.474 |
| macrophage_unactivated | 0.754 | 0.994 |
| IL1 | -0.086 | 1.258 |
| Rapamycin | 1.093 | 0.697 |
| Tcell | 1.844 | 0.74 |
| GMCSF | -0.945 | -0.19 |
| IFNab | 0.088 | -0.109 |
| IFNg | 2.392 | 0.358 |
| IFNg_GMCSF1 | 2.91 | 0.217 |
| Rv1432_day32 | -2.282 | 0.0 |
| Rv1565c_day32 | 0.0 | -0.395 |
| secA2_input | -0.941 | -0.611 |
| delta_Rv3594 | 1.225 | -0.561 |
| delta_Rv3717 | 0.603 | -0.076 |
| delta_Rv3811 | -1.022 | -0.546 |
| delta_Rv0954 | -1.292 | -0.078 |
| PonA1 | -0.793 | -0.874 |
| EccD1_KO | -2.131 | -0.898 |
| EspI_KO | -2.059 | -1.962 |
| PE35_KO | -1.619 | -0.709 |
| PPE68_KO | -0.921 | -0.246 |
| glycerol2 | 0.988 | -0.68 |
| lignocerate | 1.841 | -0.591 |
| oleate | -1.494 | 0.142 |
| phosphatidylcholine | 0.794 | -0.398 |
| acetate | 2.031 | -1.197 |
| glucAc | 0.157 | -1.535 |
| Rv0950ko | 0.582 | 0.754 |
| Rv1096ko | -0.211 | 1.221 |
| Rv3684ko | 1.89 | 1.608 |
| delta_otsA_trehalose | -1.296 | -1.661 |