Top 10 genes with highest correlation to Rv1772/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1964/yrbE3A | (cc=0.4517) | info on Rv1964/yrbE3A |
| Rv1892/- | (cc=0.4144) | info on Rv1892/- |
| Rv0057/- | (cc=0.4116) | info on Rv0057/- |
| Rv3618/- | (cc=0.4083) | info on Rv3618/- |
| Rv0364/- | (cc=0.4051) | info on Rv0364/- |
| Rv2789c/fadE21 | (cc=0.4042) | info on Rv2789c/fadE21 |
| Rv2480c/- | (cc=0.4005) | info on Rv2480c/- |
| Rv2495c/bkdC | (cc=0.4001) | info on Rv2495c/bkdC |
| Rv0222/echA1 | (cc=0.3902) | info on Rv0222/echA1 |
| Rv1720c/vapC12 | (cc=0.3862) | info on Rv1720c/vapC12 |
Correlation of Rv1772/- with Rv1964/yrbE3A
Normalized LFCs for Rv1772/-:
(description and provenance of datasets)
| Rv1772/- | Rv1964/yrbE3A | |
| Fe_supp_jason_reseq | -3.334 | -0.073 |
| low_pH_jason_reseq | -1.822 | -0.617 |
| NO_jason_reseq | -0.68 | -0.462 |
| B6_jason_reseq | -2.688 | -2.076 |
| MHCII_jason_reseq | -3.659 | -0.791 |
| Isoniazid02 | 0.354 | 0.354 |
| Rifampicin4 | -1.543 | 0.761 |
| Ethambutol3 | 1.497 | 0.846 |
| Meropenem3 | 0.973 | 0.583 |
| Vancomycin16 | 0.154 | 0.615 |
| Rv2680_day32 | -0.828 | -1.004 |
| H37Rv_KO_MarP | -0.799 | -0.26 |
| hypoxia_3wks | -1.049 | 0.283 |
| hypoxia_6wks | -1.138 | -0.044 |
| glycerol | -1.546 | -1.295 |
| cholesterol | 0.384 | -0.733 |
| AJ | 0.65 | 0.254 |
| Bibs02 | 0.107 | -0.596 |
| Bibs02c | 0.082 | 0.045 |
| BL6 | 1.146 | 0.527 |
| BL6a | 1.551 | -0.221 |
| BXD01 | -0.501 | -0.106 |
| BXD010 | -1.496 | -0.215 |
| BXD011 | 0.099 | 0.438 |
| BXD03 | 0.851 | 0.712 |
| BXD04 | -0.668 | 0.135 |
| BXD05 | 1.785 | -0.197 |
| BXD06 | -0.967 | 0.097 |
| BXD07 | 0.345 | 0.104 |
| BXD08 | -0.911 | 0.667 |
| BXD09 | -0.18 | -0.095 |
| CAST | -0.295 | -0.966 |
| CCcont | -0.49 | 0.193 |
| DS01 | -0.527 | -0.662 |
| DS02 | 2.083 | -0.422 |
| DS04 | 0.603 | -0.436 |
| DS0c | -1.752 | -0.154 |
| GP01 | 0.307 | 1.515 |
| GP02 | -1.275 | -1.02 |
| GP0c | -1.109 | -0.057 |
| NOD | 3.695 | 0.758 |
| NZO | -0.256 | -0.692 |
| PWK | 1.421 | -0.672 |
| H37Rv_KO_CtpC | 1.419 | 0.933 |
| H37Rv_KO_CtpD | -1.405 | 1.268 |
| H37Rv_KO_Rv1272 | 0.0 | 0.787 |
| H37Rv_KO_SugABC | -1.22 | -1.387 |
| H37Rv_KO_MbtN | 2.598 | 1.105 |
| Trans05 | -1.609 | 0.554 |
| macrophage_unactivated | 0.754 | 0.297 |
| IL1 | -0.086 | -0.383 |
| Rapamycin | 1.093 | -0.04 |
| Tcell | 1.844 | 0.163 |
| GMCSF | -0.945 | 0.28 |
| IFNab | 0.088 | 0.475 |
| IFNg | 2.392 | 1.36 |
| IFNg_GMCSF1 | 2.91 | 0.383 |
| Rv1432_day32 | -2.282 | 0.039 |
| Rv1565c_day32 | 0.0 | -0.272 |
| secA2_input | -0.941 | 0.24 |
| delta_Rv3594 | 1.225 | 0.405 |
| delta_Rv3717 | 0.603 | 0.258 |
| delta_Rv3811 | -1.022 | 0.721 |
| delta_Rv0954 | -1.292 | 0.669 |
| PonA1 | -0.793 | 0.084 |
| EccD1_KO | -2.131 | -0.664 |
| EspI_KO | -2.059 | -0.662 |
| PE35_KO | -1.619 | -0.379 |
| PPE68_KO | -0.921 | -0.31 |
| glycerol2 | 0.988 | 0.153 |
| lignocerate | 1.841 | 0.509 |
| oleate | -1.494 | -0.634 |
| phosphatidylcholine | 0.794 | 0.136 |
| acetate | 2.031 | 1.124 |
| glucAc | 0.157 | 0.876 |
| Rv0950ko | 0.582 | 0.151 |
| Rv1096ko | -0.211 | 0.48 |
| Rv3684ko | 1.89 | 0.888 |
| delta_otsA_trehalose | -1.296 | 0.359 |