TnSeqCorr

Top 10 genes with highest correlation to Rv1754c/-:

update plotcorrelationlink to info on gene
Rv2161c/- (cc=0.4631) info on Rv2161c/-
Rv1785c/cyp143 (cc=0.4129) info on Rv1785c/cyp143
Rv0742/PE_PGRS8 (cc=0.4082) info on Rv0742/PE_PGRS8
Rv2500c/fadE19 (cc=0.408) info on Rv2500c/fadE19
Rv1584c/- (cc=0.4066) info on Rv1584c/-
Rv3160c/- (cc=0.4003) info on Rv3160c/-
Rv3826/fadD23 (cc=0.3982) info on Rv3826/fadD23
Rv3158/nuoN (cc=0.3958) info on Rv3158/nuoN
Rv1787/PPE25 (cc=0.385) info on Rv1787/PPE25
Rv1770/- (cc=0.3772) info on Rv1770/-

Correlation of Rv1754c/- with Rv0742/PE_PGRS8

Normalized LFCs for Rv1754c/-:
(description and provenance of datasets)
Rv1754c/-Rv0742/PE_PGRS8
Fe_supp_jason_reseq

0.011

-1.888

low_pH_jason_reseq

-0.442

0.562

NO_jason_reseq

0.055

-0.538

B6_jason_reseq

-0.284

-1.831

MHCII_jason_reseq

-0.283

-2.072

Isoniazid02

0.69

-0.065

Rifampicin4

3.344

1.616

Ethambutol3

0.664

-0.044

Meropenem3

-0.374

0.386

Vancomycin16

1.73

-0.024

Rv2680_day32

0.183

0.605

H37Rv_KO_MarP

0.212

0.477

hypoxia_3wks

-0.674

0.833

hypoxia_6wks

-0.207

-1.088

glycerol

0.164

0.045

cholesterol

0.338

-0.366

AJ

0.378

0.128

Bibs02

-0.101

-0.36

Bibs02c

0.327

0.799

BL6

0.366

1.464

BL6a

0.425

1.39

BXD01

0.856

1.329

BXD010

0.433

0.519

BXD011

1.18

1.026

BXD03

0.443

1.328

BXD04

0.524

0.0

BXD05

0.166

1.827

BXD06

0.286

0.571

BXD07

0.468

0.83

BXD08

0.699

1.234

BXD09

0.134

1.298

CAST

-0.362

1.053

CCcont

0.497

1.218

DS01

0.226

0.587

DS02

0.145

0.21

DS04

-0.091

0.266

DS0c

0.424

-0.341

GP01

0.408

2.262

GP02

1.011

1.611

GP0c

0.426

1.126

NOD

0.454

-0.6

NZO

-0.227

-0.448

PWK

-1.248

0.573

H37Rv_KO_CtpC

0.654

1.092

H37Rv_KO_CtpD

0.838

0.494

H37Rv_KO_Rv1272

0.794

0.94

H37Rv_KO_SugABC

0.384

0.915

H37Rv_KO_MbtN

0.113

0.937

Trans05

1.442

1.328

macrophage_unactivated

0.376

0.922

IL1

0.439

0.581

Rapamycin

0.157

0.703

Tcell

0.834

0.766

GMCSF

0.187

1.328

IFNab

0.302

0.287

IFNg

0.369

-0.561

IFNg_GMCSF1

0.192

0.229

Rv1432_day32

-0.724

1.042

Rv1565c_day32

-1.987

-1.703

secA2_input

-0.553

1.249

delta_Rv3594

-0.422

-0.405

delta_Rv3717

-0.17

-0.447

delta_Rv3811

0.0

-0.428

delta_Rv0954

0.036

-0.868

PonA1

-0.638

-2.069

EccD1_KO

0.0

-0.257

EspI_KO

-0.145

-0.807

PE35_KO

0.341

-0.166

PPE68_KO

0.179

0.0

glycerol2

0.196

0.792

lignocerate

0.613

0.737

oleate

0.179

1.311

phosphatidylcholine

0.521

1.045

acetate

0.485

0.359

glucAc

0.372

0.254

Rv0950ko

-0.178

-0.205

Rv1096ko

-0.489

-0.54

Rv3684ko

-0.043

-0.793

delta_otsA_trehalose

1.21

-0.388