Top 10 genes with highest correlation to Rv1746/pknF:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1291c/- | (cc=0.5267) | info on Rv1291c/- |
| Rv1766/- | (cc=0.5202) | info on Rv1766/- |
| Rv1902c/nanT | (cc=0.4989) | info on Rv1902c/nanT |
| Rv1668c/- | (cc=0.4855) | info on Rv1668c/- |
| Rv2458/mmuM | (cc=0.4844) | info on Rv2458/mmuM |
| Rv2556c/- | (cc=0.4837) | info on Rv2556c/- |
| Rv1638A/- | (cc=0.4805) | info on Rv1638A/- |
| Rv1935c/echA13 | (cc=0.462) | info on Rv1935c/echA13 |
| Rv0838/lpqR | (cc=0.4526) | info on Rv0838/lpqR |
| Rv2949c/- | (cc=0.4462) | info on Rv2949c/- |
Correlation of Rv1746/pknF with Rv2556c/-
Normalized LFCs for Rv1746/pknF:
(description and provenance of datasets)
| Rv1746/pknF | Rv2556c/- | |
| Fe_supp_jason_reseq | 0.62 | 0.478 |
| low_pH_jason_reseq | 0.612 | 0.905 |
| NO_jason_reseq | 0.391 | -0.701 |
| B6_jason_reseq | 0.103 | -0.246 |
| MHCII_jason_reseq | 0.881 | 0.683 |
| Isoniazid02 | 0.167 | 0.156 |
| Rifampicin4 | -0.252 | -0.653 |
| Ethambutol3 | -0.263 | -0.375 |
| Meropenem3 | 0.071 | 0.189 |
| Vancomycin16 | -0.602 | -0.47 |
| Rv2680_day32 | 0.196 | 0.859 |
| H37Rv_KO_MarP | 0.344 | 0.775 |
| hypoxia_3wks | 0.0 | -1.372 |
| hypoxia_6wks | -0.115 | -0.092 |
| glycerol | -0.547 | -1.448 |
| cholesterol | -0.548 | -1.447 |
| AJ | -0.18 | -1.205 |
| Bibs02 | -0.294 | 0.262 |
| Bibs02c | -0.293 | 0.82 |
| BL6 | -0.42 | -1.18 |
| BL6a | -0.95 | 0.418 |
| BXD01 | -0.188 | -2.22 |
| BXD010 | -0.555 | -0.975 |
| BXD011 | -0.502 | -0.724 |
| BXD03 | -0.229 | -1.351 |
| BXD04 | -0.131 | -2.203 |
| BXD05 | -0.154 | -0.605 |
| BXD06 | -0.306 | -1.742 |
| BXD07 | 0.156 | -1.521 |
| BXD08 | -0.108 | -0.773 |
| BXD09 | -0.315 | -1.985 |
| CAST | -0.506 | 0.255 |
| CCcont | -0.689 | -1.578 |
| DS01 | -0.154 | -0.715 |
| DS02 | -0.466 | 0.124 |
| DS04 | -0.295 | -0.372 |
| DS0c | -0.041 | 0.255 |
| GP01 | -0.235 | 0.581 |
| GP02 | -0.109 | -1.358 |
| GP0c | -0.43 | -1.299 |
| NOD | -0.314 | -0.278 |
| NZO | -0.195 | 0.043 |
| PWK | -0.112 | -0.86 |
| H37Rv_KO_CtpC | -0.928 | -2.081 |
| H37Rv_KO_CtpD | -1.35 | -0.688 |
| H37Rv_KO_Rv1272 | 0.731 | 0.45 |
| H37Rv_KO_SugABC | 0.826 | 1.4 |
| H37Rv_KO_MbtN | -1.247 | -2.016 |
| Trans05 | -0.251 | 0.038 |
| macrophage_unactivated | -0.312 | 0.502 |
| IL1 | -0.51 | 0.807 |
| Rapamycin | -0.304 | -2.093 |
| Tcell | -0.169 | -1.756 |
| GMCSF | 0.85 | -2.22 |
| IFNab | -0.181 | -1.312 |
| IFNg | -0.16 | -0.898 |
| IFNg_GMCSF1 | 0.091 | -0.984 |
| Rv1432_day32 | 0.441 | 0.563 |
| Rv1565c_day32 | -0.284 | 0.117 |
| secA2_input | 0.0 | -1.327 |
| delta_Rv3594 | 0.688 | 1.302 |
| delta_Rv3717 | 0.306 | 0.094 |
| delta_Rv3811 | 0.049 | 0.568 |
| delta_Rv0954 | 0.633 | 0.442 |
| PonA1 | 1.18 | 0.059 |
| EccD1_KO | 1.746 | 2.68 |
| EspI_KO | 0.838 | 1.184 |
| PE35_KO | 0.359 | 0.779 |
| PPE68_KO | 0.394 | 0.41 |
| glycerol2 | -0.688 | -0.221 |
| lignocerate | 0.018 | -0.062 |
| oleate | 0.427 | 0.852 |
| phosphatidylcholine | 0.273 | 0.199 |
| acetate | -0.648 | -0.454 |
| glucAc | -0.374 | -0.482 |
| Rv0950ko | 0.0 | 0.41 |
| Rv1096ko | -0.688 | -0.66 |
| Rv3684ko | -0.684 | -0.563 |
| delta_otsA_trehalose | 1.078 | -1.115 |