Top 10 genes with highest correlation to Rv1746/pknF:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1291c/- | (cc=0.5267) | info on Rv1291c/- |
| Rv1766/- | (cc=0.5202) | info on Rv1766/- |
| Rv1902c/nanT | (cc=0.4989) | info on Rv1902c/nanT |
| Rv1668c/- | (cc=0.4855) | info on Rv1668c/- |
| Rv2458/mmuM | (cc=0.4844) | info on Rv2458/mmuM |
| Rv2556c/- | (cc=0.4837) | info on Rv2556c/- |
| Rv1638A/- | (cc=0.4805) | info on Rv1638A/- |
| Rv1935c/echA13 | (cc=0.462) | info on Rv1935c/echA13 |
| Rv0838/lpqR | (cc=0.4526) | info on Rv0838/lpqR |
| Rv2949c/- | (cc=0.4462) | info on Rv2949c/- |
Correlation of Rv1746/pknF with Rv1638A/-
Normalized LFCs for Rv1746/pknF:
(description and provenance of datasets)
| Rv1746/pknF | Rv1638A/- | |
| Fe_supp_jason_reseq | 0.62 | 0.74 |
| low_pH_jason_reseq | 0.612 | -0.192 |
| NO_jason_reseq | 0.391 | 0.415 |
| B6_jason_reseq | 0.103 | 0.982 |
| MHCII_jason_reseq | 0.881 | 0.893 |
| Isoniazid02 | 0.167 | 0.0 |
| Rifampicin4 | -0.252 | -0.374 |
| Ethambutol3 | -0.263 | -0.168 |
| Meropenem3 | 0.071 | -0.165 |
| Vancomycin16 | -0.602 | -0.366 |
| Rv2680_day32 | 0.196 | 0.0 |
| H37Rv_KO_MarP | 0.344 | -0.995 |
| hypoxia_3wks | 0.0 | 0.08 |
| hypoxia_6wks | -0.115 | 1.038 |
| glycerol | -0.547 | -0.199 |
| cholesterol | -0.548 | -1.288 |
| AJ | -0.18 | -1.708 |
| Bibs02 | -0.294 | 0.473 |
| Bibs02c | -0.293 | -1.694 |
| BL6 | -0.42 | -1.608 |
| BL6a | -0.95 | -0.439 |
| BXD01 | -0.188 | -1.055 |
| BXD010 | -0.555 | -1.548 |
| BXD011 | -0.502 | -0.64 |
| BXD03 | -0.229 | 0.062 |
| BXD04 | -0.131 | -1.406 |
| BXD05 | -0.154 | 0.444 |
| BXD06 | -0.306 | -0.296 |
| BXD07 | 0.156 | -1.052 |
| BXD08 | -0.108 | -0.032 |
| BXD09 | -0.315 | -0.138 |
| CAST | -0.506 | -0.577 |
| CCcont | -0.689 | -1.597 |
| DS01 | -0.154 | -0.814 |
| DS02 | -0.466 | -0.359 |
| DS04 | -0.295 | -0.216 |
| DS0c | -0.041 | -0.418 |
| GP01 | -0.235 | -2.256 |
| GP02 | -0.109 | -1.901 |
| GP0c | -0.43 | -2.723 |
| NOD | -0.314 | -0.81 |
| NZO | -0.195 | -0.12 |
| PWK | -0.112 | -0.023 |
| H37Rv_KO_CtpC | -0.928 | -2.535 |
| H37Rv_KO_CtpD | -1.35 | -2.767 |
| H37Rv_KO_Rv1272 | 0.731 | -1.216 |
| H37Rv_KO_SugABC | 0.826 | 0.812 |
| H37Rv_KO_MbtN | -1.247 | -2.355 |
| Trans05 | -0.251 | -1.441 |
| macrophage_unactivated | -0.312 | 0.17 |
| IL1 | -0.51 | 0.264 |
| Rapamycin | -0.304 | -0.473 |
| Tcell | -0.169 | -0.775 |
| GMCSF | 0.85 | 0.496 |
| IFNab | -0.181 | 0.986 |
| IFNg | -0.16 | 0.588 |
| IFNg_GMCSF1 | 0.091 | -1.247 |
| Rv1432_day32 | 0.441 | 0.0 |
| Rv1565c_day32 | -0.284 | 0.0 |
| secA2_input | 0.0 | 0.598 |
| delta_Rv3594 | 0.688 | 4.505 |
| delta_Rv3717 | 0.306 | 2.81 |
| delta_Rv3811 | 0.049 | 2.748 |
| delta_Rv0954 | 0.633 | 1.553 |
| PonA1 | 1.18 | 4.464 |
| EccD1_KO | 1.746 | 0.194 |
| EspI_KO | 0.838 | 2.938 |
| PE35_KO | 0.359 | 0.796 |
| PPE68_KO | 0.394 | -0.195 |
| glycerol2 | -0.688 | -1.065 |
| lignocerate | 0.018 | -1.34 |
| oleate | 0.427 | 0.15 |
| phosphatidylcholine | 0.273 | -1.199 |
| acetate | -0.648 | -0.622 |
| glucAc | -0.374 | -2.082 |
| Rv0950ko | 0.0 | 0.874 |
| Rv1096ko | -0.688 | 3.685 |
| Rv3684ko | -0.684 | 0.498 |
| delta_otsA_trehalose | 1.078 | -0.468 |