Top 10 genes with highest correlation to Rv1746/pknF:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1291c/- | (cc=0.5267) | info on Rv1291c/- |
| Rv1766/- | (cc=0.5202) | info on Rv1766/- |
| Rv1902c/nanT | (cc=0.4989) | info on Rv1902c/nanT |
| Rv1668c/- | (cc=0.4855) | info on Rv1668c/- |
| Rv2458/mmuM | (cc=0.4844) | info on Rv2458/mmuM |
| Rv2556c/- | (cc=0.4837) | info on Rv2556c/- |
| Rv1638A/- | (cc=0.4805) | info on Rv1638A/- |
| Rv1935c/echA13 | (cc=0.462) | info on Rv1935c/echA13 |
| Rv0838/lpqR | (cc=0.4526) | info on Rv0838/lpqR |
| Rv2949c/- | (cc=0.4462) | info on Rv2949c/- |
Correlation of Rv1746/pknF with Rv1935c/echA13
Normalized LFCs for Rv1746/pknF:
(description and provenance of datasets)
| Rv1746/pknF | Rv1935c/echA13 | |
| Fe_supp_jason_reseq | 0.62 | 0.286 |
| low_pH_jason_reseq | 0.612 | -0.44 |
| NO_jason_reseq | 0.391 | 0.1 |
| B6_jason_reseq | 0.103 | 1.142 |
| MHCII_jason_reseq | 0.881 | 0.481 |
| Isoniazid02 | 0.167 | 0.509 |
| Rifampicin4 | -0.252 | 0.753 |
| Ethambutol3 | -0.263 | 0.544 |
| Meropenem3 | 0.071 | 2.164 |
| Vancomycin16 | -0.602 | 0.708 |
| Rv2680_day32 | 0.196 | 0.694 |
| H37Rv_KO_MarP | 0.344 | 0.625 |
| hypoxia_3wks | 0.0 | 0.128 |
| hypoxia_6wks | -0.115 | 0.121 |
| glycerol | -0.547 | -2.017 |
| cholesterol | -0.548 | -0.744 |
| AJ | -0.18 | -0.069 |
| Bibs02 | -0.294 | -0.617 |
| Bibs02c | -0.293 | -0.347 |
| BL6 | -0.42 | -0.672 |
| BL6a | -0.95 | -0.496 |
| BXD01 | -0.188 | -0.571 |
| BXD010 | -0.555 | -0.472 |
| BXD011 | -0.502 | -0.537 |
| BXD03 | -0.229 | -0.727 |
| BXD04 | -0.131 | -0.783 |
| BXD05 | -0.154 | -0.056 |
| BXD06 | -0.306 | -0.71 |
| BXD07 | 0.156 | -0.213 |
| BXD08 | -0.108 | -0.62 |
| BXD09 | -0.315 | -0.063 |
| CAST | -0.506 | 0.21 |
| CCcont | -0.689 | -0.803 |
| DS01 | -0.154 | -0.648 |
| DS02 | -0.466 | -0.495 |
| DS04 | -0.295 | 0.177 |
| DS0c | -0.041 | -0.242 |
| GP01 | -0.235 | -0.131 |
| GP02 | -0.109 | 1.044 |
| GP0c | -0.43 | -0.556 |
| NOD | -0.314 | -0.353 |
| NZO | -0.195 | 0.581 |
| PWK | -0.112 | -0.838 |
| H37Rv_KO_CtpC | -0.928 | -2.121 |
| H37Rv_KO_CtpD | -1.35 | -0.688 |
| H37Rv_KO_Rv1272 | 0.731 | -1.737 |
| H37Rv_KO_SugABC | 0.826 | 0.188 |
| H37Rv_KO_MbtN | -1.247 | -2.394 |
| Trans05 | -0.251 | -0.434 |
| macrophage_unactivated | -0.312 | -0.369 |
| IL1 | -0.51 | 0.389 |
| Rapamycin | -0.304 | 0.454 |
| Tcell | -0.169 | -0.143 |
| GMCSF | 0.85 | 1.587 |
| IFNab | -0.181 | -0.115 |
| IFNg | -0.16 | -0.016 |
| IFNg_GMCSF1 | 0.091 | 0.515 |
| Rv1432_day32 | 0.441 | 0.42 |
| Rv1565c_day32 | -0.284 | -1.385 |
| secA2_input | 0.0 | -0.704 |
| delta_Rv3594 | 0.688 | -0.297 |
| delta_Rv3717 | 0.306 | 0.188 |
| delta_Rv3811 | 0.049 | -0.178 |
| delta_Rv0954 | 0.633 | -0.19 |
| PonA1 | 1.18 | 0.197 |
| EccD1_KO | 1.746 | 0.924 |
| EspI_KO | 0.838 | 0.194 |
| PE35_KO | 0.359 | 0.624 |
| PPE68_KO | 0.394 | 0.278 |
| glycerol2 | -0.688 | -1.003 |
| lignocerate | 0.018 | -0.632 |
| oleate | 0.427 | -0.313 |
| phosphatidylcholine | 0.273 | -0.374 |
| acetate | -0.648 | -0.989 |
| glucAc | -0.374 | -0.276 |
| Rv0950ko | 0.0 | 0.16 |
| Rv1096ko | -0.688 | 0.314 |
| Rv3684ko | -0.684 | 0.373 |
| delta_otsA_trehalose | 1.078 | 1.177 |