Top 10 genes with highest correlation to Rv1716/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1969/mce3D | (cc=0.6313) | info on Rv1969/mce3D |
| Rv2597/- | (cc=0.6118) | info on Rv2597/- |
| Rv1945/- | (cc=0.5593) | info on Rv1945/- |
| Rv1736c/narX | (cc=0.5573) | info on Rv1736c/narX |
| Rv3635/- | (cc=0.5275) | info on Rv3635/- |
| Rv0007/- | (cc=0.4685) | info on Rv0007/- |
| Rv3793/embC | (cc=0.4675) | info on Rv3793/embC |
| Rv1288/- | (cc=0.4655) | info on Rv1288/- |
| Rv2171/lppM | (cc=0.4652) | info on Rv2171/lppM |
| Rv0233/nrdB | (cc=0.4622) | info on Rv0233/nrdB |
Correlation of Rv1716/- with Rv3635/-
Normalized LFCs for Rv1716/-:
(description and provenance of datasets)
| Rv1716/- | Rv3635/- | |
| Fe_supp_jason_reseq | 1.457 | 0.442 |
| low_pH_jason_reseq | 0.207 | 0.167 |
| NO_jason_reseq | 1.118 | 0.507 |
| B6_jason_reseq | 0.688 | 0.311 |
| MHCII_jason_reseq | 1.549 | 0.926 |
| Isoniazid02 | 0.405 | 0.0 |
| Rifampicin4 | -1.059 | 0.0 |
| Ethambutol3 | 0.085 | 0.168 |
| Meropenem3 | 0.063 | 0.165 |
| Vancomycin16 | -0.297 | 0.0 |
| Rv2680_day32 | 0.038 | 0.0 |
| H37Rv_KO_MarP | 0.306 | -0.162 |
| hypoxia_3wks | -0.522 | 0.0 |
| hypoxia_6wks | 0.629 | -0.43 |
| glycerol | -0.398 | 0.086 |
| cholesterol | -0.795 | -0.203 |
| AJ | -0.161 | -0.698 |
| Bibs02 | 0.74 | -1.031 |
| Bibs02c | 1.159 | 0.414 |
| BL6 | -0.71 | -1.144 |
| BL6a | -0.311 | -0.377 |
| BXD01 | -0.792 | -1.062 |
| BXD010 | -0.943 | -0.629 |
| BXD011 | -0.12 | -1.039 |
| BXD03 | -0.619 | -1.237 |
| BXD04 | -0.386 | -0.896 |
| BXD05 | 0.565 | -0.863 |
| BXD06 | -1.012 | -0.967 |
| BXD07 | -0.255 | -1.003 |
| BXD08 | -0.498 | -0.75 |
| BXD09 | 0.387 | -1.018 |
| CAST | -0.362 | 0.284 |
| CCcont | -0.877 | -1.366 |
| DS01 | 0.436 | -0.45 |
| DS02 | 0.744 | -0.304 |
| DS04 | 1.727 | -0.271 |
| DS0c | -0.099 | 0.0 |
| GP01 | -0.057 | -0.633 |
| GP02 | 0.971 | -0.761 |
| GP0c | 0.676 | -1.19 |
| NOD | 0.539 | -0.428 |
| NZO | -1.095 | -0.6 |
| PWK | -0.361 | -0.706 |
| H37Rv_KO_CtpC | 0.206 | -1.041 |
| H37Rv_KO_CtpD | -1.637 | -0.622 |
| H37Rv_KO_Rv1272 | -0.222 | 0.469 |
| H37Rv_KO_SugABC | -1.644 | -0.906 |
| H37Rv_KO_MbtN | 0.409 | -0.437 |
| Trans05 | -0.408 | -1.195 |
| macrophage_unactivated | 0.066 | -0.83 |
| IL1 | -0.472 | -0.374 |
| Rapamycin | 0.893 | -0.807 |
| Tcell | -0.518 | -0.411 |
| GMCSF | 0.723 | -0.694 |
| IFNab | -0.067 | -0.795 |
| IFNg | 0.168 | -0.337 |
| IFNg_GMCSF1 | -0.575 | 0.0 |
| Rv1432_day32 | 0.094 | -0.884 |
| Rv1565c_day32 | 6.0 | 1.339 |
| secA2_input | -1.586 | -1.943 |
| delta_Rv3594 | 1.323 | 0.828 |
| delta_Rv3717 | 0.692 | 0.0 |
| delta_Rv3811 | 0.416 | -0.205 |
| delta_Rv0954 | 1.225 | -0.178 |
| PonA1 | 0.299 | 0.624 |
| EccD1_KO | -0.829 | -0.816 |
| EspI_KO | 0.354 | -1.258 |
| PE35_KO | 0.204 | -0.723 |
| PPE68_KO | 0.093 | -0.793 |
| glycerol2 | -0.46 | -1.208 |
| lignocerate | -0.222 | -1.218 |
| oleate | 0.23 | -0.588 |
| phosphatidylcholine | 0.101 | -1.032 |
| acetate | -0.042 | -1.433 |
| glucAc | -0.308 | -1.034 |
| Rv0950ko | 0.537 | -0.582 |
| Rv1096ko | 0.76 | -0.28 |
| Rv3684ko | 0.583 | 0.285 |
| delta_otsA_trehalose | 0.533 | 0.0 |