Top 10 genes with highest correlation to Rv1716/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1969/mce3D | (cc=0.6313) | info on Rv1969/mce3D |
| Rv2597/- | (cc=0.6118) | info on Rv2597/- |
| Rv1945/- | (cc=0.5593) | info on Rv1945/- |
| Rv1736c/narX | (cc=0.5573) | info on Rv1736c/narX |
| Rv3635/- | (cc=0.5275) | info on Rv3635/- |
| Rv0007/- | (cc=0.4685) | info on Rv0007/- |
| Rv3793/embC | (cc=0.4675) | info on Rv3793/embC |
| Rv1288/- | (cc=0.4655) | info on Rv1288/- |
| Rv2171/lppM | (cc=0.4652) | info on Rv2171/lppM |
| Rv0233/nrdB | (cc=0.4622) | info on Rv0233/nrdB |
Correlation of Rv1716/- with Rv0233/nrdB
Normalized LFCs for Rv1716/-:
(description and provenance of datasets)
| Rv1716/- | Rv0233/nrdB | |
| Fe_supp_jason_reseq | 1.457 | 0.2 |
| low_pH_jason_reseq | 0.207 | -0.095 |
| NO_jason_reseq | 1.118 | -0.131 |
| B6_jason_reseq | 0.688 | 0.854 |
| MHCII_jason_reseq | 1.549 | 1.421 |
| Isoniazid02 | 0.405 | 0.322 |
| Rifampicin4 | -1.059 | -0.192 |
| Ethambutol3 | 0.085 | 0.154 |
| Meropenem3 | 0.063 | 0.291 |
| Vancomycin16 | -0.297 | -0.443 |
| Rv2680_day32 | 0.038 | 0.614 |
| H37Rv_KO_MarP | 0.306 | 0.167 |
| hypoxia_3wks | -0.522 | -0.159 |
| hypoxia_6wks | 0.629 | 0.192 |
| glycerol | -0.398 | -0.973 |
| cholesterol | -0.795 | -0.39 |
| AJ | -0.161 | 0.316 |
| Bibs02 | 0.74 | 0.891 |
| Bibs02c | 1.159 | 0.543 |
| BL6 | -0.71 | -1.416 |
| BL6a | -0.311 | -0.575 |
| BXD01 | -0.792 | -0.696 |
| BXD010 | -0.943 | -0.537 |
| BXD011 | -0.12 | -0.693 |
| BXD03 | -0.619 | -1.509 |
| BXD04 | -0.386 | -0.539 |
| BXD05 | 0.565 | -0.41 |
| BXD06 | -1.012 | -0.887 |
| BXD07 | -0.255 | -1.157 |
| BXD08 | -0.498 | -0.354 |
| BXD09 | 0.387 | -0.919 |
| CAST | -0.362 | -0.038 |
| CCcont | -0.877 | -1.564 |
| DS01 | 0.436 | 1.025 |
| DS02 | 0.744 | 0.748 |
| DS04 | 1.727 | 0.933 |
| DS0c | -0.099 | 0.548 |
| GP01 | -0.057 | -0.911 |
| GP02 | 0.971 | -0.359 |
| GP0c | 0.676 | -0.382 |
| NOD | 0.539 | 0.605 |
| NZO | -1.095 | 0.12 |
| PWK | -0.361 | -0.242 |
| H37Rv_KO_CtpC | 0.206 | -1.19 |
| H37Rv_KO_CtpD | -1.637 | -0.803 |
| H37Rv_KO_Rv1272 | -0.222 | -0.626 |
| H37Rv_KO_SugABC | -1.644 | -0.316 |
| H37Rv_KO_MbtN | 0.409 | -0.755 |
| Trans05 | -0.408 | -0.13 |
| macrophage_unactivated | 0.066 | -1.083 |
| IL1 | -0.472 | -0.193 |
| Rapamycin | 0.893 | -0.786 |
| Tcell | -0.518 | -0.046 |
| GMCSF | 0.723 | 0.459 |
| IFNab | -0.067 | -0.478 |
| IFNg | 0.168 | 0.38 |
| IFNg_GMCSF1 | -0.575 | -0.396 |
| Rv1432_day32 | 0.094 | 0.042 |
| Rv1565c_day32 | 6.0 | 0.963 |
| secA2_input | -1.586 | 0.106 |
| delta_Rv3594 | 1.323 | -0.399 |
| delta_Rv3717 | 0.692 | -0.766 |
| delta_Rv3811 | 0.416 | -0.589 |
| delta_Rv0954 | 1.225 | -0.252 |
| PonA1 | 0.299 | -0.066 |
| EccD1_KO | -0.829 | -0.286 |
| EspI_KO | 0.354 | -0.368 |
| PE35_KO | 0.204 | -1.041 |
| PPE68_KO | 0.093 | -0.483 |
| glycerol2 | -0.46 | -0.911 |
| lignocerate | -0.222 | -0.609 |
| oleate | 0.23 | -0.404 |
| phosphatidylcholine | 0.101 | -0.598 |
| acetate | -0.042 | -1.107 |
| glucAc | -0.308 | -1.029 |
| Rv0950ko | 0.537 | 0.308 |
| Rv1096ko | 0.76 | 0.805 |
| Rv3684ko | 0.583 | 0.259 |
| delta_otsA_trehalose | 0.533 | 0.437 |