Top 10 genes with highest correlation to Rv1716/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1969/mce3D | (cc=0.6313) | info on Rv1969/mce3D |
| Rv2597/- | (cc=0.6118) | info on Rv2597/- |
| Rv1945/- | (cc=0.5593) | info on Rv1945/- |
| Rv1736c/narX | (cc=0.5573) | info on Rv1736c/narX |
| Rv3635/- | (cc=0.5275) | info on Rv3635/- |
| Rv0007/- | (cc=0.4685) | info on Rv0007/- |
| Rv3793/embC | (cc=0.4675) | info on Rv3793/embC |
| Rv1288/- | (cc=0.4655) | info on Rv1288/- |
| Rv2171/lppM | (cc=0.4652) | info on Rv2171/lppM |
| Rv0233/nrdB | (cc=0.4622) | info on Rv0233/nrdB |
Correlation of Rv1716/- with Rv1945/-
Normalized LFCs for Rv1716/-:
(description and provenance of datasets)
| Rv1716/- | Rv1945/- | |
| Fe_supp_jason_reseq | 1.457 | -0.095 |
| low_pH_jason_reseq | 0.207 | 0.059 |
| NO_jason_reseq | 1.118 | 0.06 |
| B6_jason_reseq | 0.688 | -0.269 |
| MHCII_jason_reseq | 1.549 | -0.023 |
| Isoniazid02 | 0.405 | -2.426 |
| Rifampicin4 | -1.059 | 0.168 |
| Ethambutol3 | 0.085 | -2.053 |
| Meropenem3 | 0.063 | -1.997 |
| Vancomycin16 | -0.297 | -1.151 |
| Rv2680_day32 | 0.038 | 0.181 |
| H37Rv_KO_MarP | 0.306 | -0.109 |
| hypoxia_3wks | -0.522 | 0.104 |
| hypoxia_6wks | 0.629 | 0.027 |
| glycerol | -0.398 | -0.336 |
| cholesterol | -0.795 | 0.012 |
| AJ | -0.161 | 0.612 |
| Bibs02 | 0.74 | 0.073 |
| Bibs02c | 1.159 | 0.717 |
| BL6 | -0.71 | -0.456 |
| BL6a | -0.311 | 0.446 |
| BXD01 | -0.792 | -0.536 |
| BXD010 | -0.943 | -0.674 |
| BXD011 | -0.12 | -0.571 |
| BXD03 | -0.619 | -0.374 |
| BXD04 | -0.386 | -0.524 |
| BXD05 | 0.565 | 0.064 |
| BXD06 | -1.012 | -0.397 |
| BXD07 | -0.255 | -0.489 |
| BXD08 | -0.498 | -0.089 |
| BXD09 | 0.387 | -0.156 |
| CAST | -0.362 | 0.592 |
| CCcont | -0.877 | -0.888 |
| DS01 | 0.436 | 0.578 |
| DS02 | 0.744 | 0.95 |
| DS04 | 1.727 | 1.382 |
| DS0c | -0.099 | 1.105 |
| GP01 | -0.057 | 0.592 |
| GP02 | 0.971 | 0.171 |
| GP0c | 0.676 | -0.567 |
| NOD | 0.539 | -0.229 |
| NZO | -1.095 | 0.707 |
| PWK | -0.361 | 0.31 |
| H37Rv_KO_CtpC | 0.206 | 0.065 |
| H37Rv_KO_CtpD | -1.637 | 1.035 |
| H37Rv_KO_Rv1272 | -0.222 | 0.045 |
| H37Rv_KO_SugABC | -1.644 | -0.233 |
| H37Rv_KO_MbtN | 0.409 | 0.388 |
| Trans05 | -0.408 | 0.463 |
| macrophage_unactivated | 0.066 | -0.849 |
| IL1 | -0.472 | 0.35 |
| Rapamycin | 0.893 | -0.77 |
| Tcell | -0.518 | -0.587 |
| GMCSF | 0.723 | -0.71 |
| IFNab | -0.067 | -0.813 |
| IFNg | 0.168 | -0.342 |
| IFNg_GMCSF1 | -0.575 | -0.047 |
| Rv1432_day32 | 0.094 | -0.286 |
| Rv1565c_day32 | 6.0 | 6.0 |
| secA2_input | -1.586 | -0.338 |
| delta_Rv3594 | 1.323 | -0.05 |
| delta_Rv3717 | 0.692 | 0.573 |
| delta_Rv3811 | 0.416 | 0.207 |
| delta_Rv0954 | 1.225 | 0.572 |
| PonA1 | 0.299 | 0.276 |
| EccD1_KO | -0.829 | -0.368 |
| EspI_KO | 0.354 | 1.141 |
| PE35_KO | 0.204 | 0.303 |
| PPE68_KO | 0.093 | 1.011 |
| glycerol2 | -0.46 | -0.247 |
| lignocerate | -0.222 | -0.387 |
| oleate | 0.23 | 0.333 |
| phosphatidylcholine | 0.101 | 0.122 |
| acetate | -0.042 | -0.101 |
| glucAc | -0.308 | -0.701 |
| Rv0950ko | 0.537 | -0.317 |
| Rv1096ko | 0.76 | -0.178 |
| Rv3684ko | 0.583 | 0.495 |
| delta_otsA_trehalose | 0.533 | 0.26 |