Top 10 genes with highest correlation to Rv1716/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1969/mce3D | (cc=0.6313) | info on Rv1969/mce3D |
| Rv2597/- | (cc=0.6118) | info on Rv2597/- |
| Rv1945/- | (cc=0.5593) | info on Rv1945/- |
| Rv1736c/narX | (cc=0.5573) | info on Rv1736c/narX |
| Rv3635/- | (cc=0.5275) | info on Rv3635/- |
| Rv0007/- | (cc=0.4685) | info on Rv0007/- |
| Rv3793/embC | (cc=0.4675) | info on Rv3793/embC |
| Rv1288/- | (cc=0.4655) | info on Rv1288/- |
| Rv2171/lppM | (cc=0.4652) | info on Rv2171/lppM |
| Rv0233/nrdB | (cc=0.4622) | info on Rv0233/nrdB |
Correlation of Rv1716/- with Rv1969/mce3D
Normalized LFCs for Rv1716/-:
(description and provenance of datasets)
| Rv1716/- | Rv1969/mce3D | |
| Fe_supp_jason_reseq | 1.457 | -0.5 |
| low_pH_jason_reseq | 0.207 | -1.499 |
| NO_jason_reseq | 1.118 | 0.126 |
| B6_jason_reseq | 0.688 | -0.435 |
| MHCII_jason_reseq | 1.549 | -0.789 |
| Isoniazid02 | 0.405 | 0.208 |
| Rifampicin4 | -1.059 | 0.566 |
| Ethambutol3 | 0.085 | 0.874 |
| Meropenem3 | 0.063 | 0.794 |
| Vancomycin16 | -0.297 | 0.194 |
| Rv2680_day32 | 0.038 | 0.488 |
| H37Rv_KO_MarP | 0.306 | 0.0 |
| hypoxia_3wks | -0.522 | -0.06 |
| hypoxia_6wks | 0.629 | -0.641 |
| glycerol | -0.398 | -0.995 |
| cholesterol | -0.795 | -0.713 |
| AJ | -0.161 | -0.644 |
| Bibs02 | 0.74 | -0.623 |
| Bibs02c | 1.159 | 0.205 |
| BL6 | -0.71 | -0.36 |
| BL6a | -0.311 | -0.55 |
| BXD01 | -0.792 | -1.202 |
| BXD010 | -0.943 | -1.158 |
| BXD011 | -0.12 | -0.874 |
| BXD03 | -0.619 | -0.616 |
| BXD04 | -0.386 | -0.812 |
| BXD05 | 0.565 | -0.292 |
| BXD06 | -1.012 | -0.592 |
| BXD07 | -0.255 | -1.415 |
| BXD08 | -0.498 | 0.239 |
| BXD09 | 0.387 | -0.64 |
| CAST | -0.362 | -0.35 |
| CCcont | -0.877 | -0.755 |
| DS01 | 0.436 | -0.537 |
| DS02 | 0.744 | -0.017 |
| DS04 | 1.727 | 0.412 |
| DS0c | -0.099 | -0.693 |
| GP01 | -0.057 | -0.244 |
| GP02 | 0.971 | 0.562 |
| GP0c | 0.676 | -0.546 |
| NOD | 0.539 | -0.281 |
| NZO | -1.095 | -0.048 |
| PWK | -0.361 | -0.647 |
| H37Rv_KO_CtpC | 0.206 | 0.923 |
| H37Rv_KO_CtpD | -1.637 | -0.562 |
| H37Rv_KO_Rv1272 | -0.222 | -0.103 |
| H37Rv_KO_SugABC | -1.644 | -0.824 |
| H37Rv_KO_MbtN | 0.409 | 1.226 |
| Trans05 | -0.408 | 0.48 |
| macrophage_unactivated | 0.066 | -0.126 |
| IL1 | -0.472 | 0.151 |
| Rapamycin | 0.893 | -0.203 |
| Tcell | -0.518 | -1.538 |
| GMCSF | 0.723 | -0.884 |
| IFNab | -0.067 | -0.819 |
| IFNg | 0.168 | -0.641 |
| IFNg_GMCSF1 | -0.575 | -1.543 |
| Rv1432_day32 | 0.094 | 0.495 |
| Rv1565c_day32 | 6.0 | 4.952 |
| secA2_input | -1.586 | -0.377 |
| delta_Rv3594 | 1.323 | 1.715 |
| delta_Rv3717 | 0.692 | 1.193 |
| delta_Rv3811 | 0.416 | 1.633 |
| delta_Rv0954 | 1.225 | 1.901 |
| PonA1 | 0.299 | 1.372 |
| EccD1_KO | -0.829 | -0.941 |
| EspI_KO | 0.354 | -0.131 |
| PE35_KO | 0.204 | 0.096 |
| PPE68_KO | 0.093 | -0.035 |
| glycerol2 | -0.46 | -0.214 |
| lignocerate | -0.222 | -0.172 |
| oleate | 0.23 | 0.031 |
| phosphatidylcholine | 0.101 | -0.232 |
| acetate | -0.042 | 0.502 |
| glucAc | -0.308 | -0.769 |
| Rv0950ko | 0.537 | -0.802 |
| Rv1096ko | 0.76 | 0.473 |
| Rv3684ko | 0.583 | -0.347 |
| delta_otsA_trehalose | 0.533 | 0.214 |