TnSeqCorr

Top 10 genes with highest correlation to Rv1677/dsbF:

update plotcorrelationlink to info on gene
Rv0506/mmpS2 (cc=0.4474) info on Rv0506/mmpS2
Rv1068c/PE_PGRS20 (cc=0.4223) info on Rv1068c/PE_PGRS20
Rv1899c/lppD (cc=0.4029) info on Rv1899c/lppD
Rv1427c/fadD12 (cc=0.3955) info on Rv1427c/fadD12
Rv2004c/- (cc=0.3943) info on Rv2004c/-
Rv1670/- (cc=0.3927) info on Rv1670/-
Rv1916/aceAb (cc=0.3886) info on Rv1916/aceAb
Rv0064A/vapB1 (cc=0.3791) info on Rv0064A/vapB1
Rv2436/rbsK (cc=0.3763) info on Rv2436/rbsK
Rv2549c/vapC20 (cc=0.3737) info on Rv2549c/vapC20

Correlation of Rv1677/dsbF with Rv2549c/vapC20

Normalized LFCs for Rv1677/dsbF:
(description and provenance of datasets)
Rv1677/dsbFRv2549c/vapC20
Fe_supp_jason_reseq

0.188

0.611

low_pH_jason_reseq

0.381

0.017

NO_jason_reseq

0.0

0.026

B6_jason_reseq

-0.743

0.279

MHCII_jason_reseq

-0.655

0.577

Isoniazid02

-1.352

-0.451

Rifampicin4

0.303

0.699

Ethambutol3

-1.345

-0.247

Meropenem3

-1.701

-0.238

Vancomycin16

-0.239

0.186

Rv2680_day32

3.254

1.401

H37Rv_KO_MarP

0.313

0.356

hypoxia_3wks

1.344

-0.323

hypoxia_6wks

0.301

0.608

glycerol

0.471

0.041

cholesterol

1.022

-0.042

AJ

-0.274

-0.387

Bibs02

-0.294

0.6

Bibs02c

-0.079

-0.724

BL6

-0.906

-1.04

BL6a

-1.291

-0.422

BXD01

-0.944

-0.632

BXD010

-1.134

0.148

BXD011

0.824

0.148

BXD03

-0.79

0.085

BXD04

-0.434

-0.437

BXD05

0.0

-0.2

BXD06

-0.87

-0.409

BXD07

0.323

-0.21

BXD08

0.35

-0.422

BXD09

0.102

-0.004

CAST

-0.809

-0.491

CCcont

-1.198

-1.321

DS01

-0.089

-0.106

DS02

1.843

0.432

DS04

0.394

0.398

DS0c

1.765

0.272

GP01

1.303

-1.116

GP02

0.45

0.526

GP0c

-0.049

-0.349

NOD

-1.172

0.103

NZO

-0.808

-0.01

PWK

-0.59

-0.01

H37Rv_KO_CtpC

0.916

0.134

H37Rv_KO_CtpD

2.149

0.254

H37Rv_KO_Rv1272

1.172

0.372

H37Rv_KO_SugABC

0.42

-0.156

H37Rv_KO_MbtN

2.278

1.087

Trans05

0.707

0.03

macrophage_unactivated

-0.398

-0.713

IL1

0.0

-0.605

Rapamycin

-1.034

-0.239

Tcell

-0.411

-0.352

GMCSF

0.85

0.277

IFNab

-0.381

0.112

IFNg

0.307

-0.115

IFNg_GMCSF1

0.0

0.33

Rv1432_day32

0.0

0.282

Rv1565c_day32

-0.161

0.1

secA2_input

-1.675

-1.126

delta_Rv3594

-0.125

0.6

delta_Rv3717

0.098

0.988

delta_Rv3811

-0.59

0.958

delta_Rv0954

-0.606

0.05

PonA1

-0.34

-0.772

EccD1_KO

-0.802

-1.467

EspI_KO

0.973

-0.559

PE35_KO

0.443

-0.992

PPE68_KO

0.394

-1.952

glycerol2

0.0

-0.363

lignocerate

0.168

-0.14

oleate

0.0

-0.512

phosphatidylcholine

0.0

-0.186

acetate

0.0

-0.113

glucAc

0.0

-0.727

Rv0950ko

-1.203

0.495

Rv1096ko

0.148

0.796

Rv3684ko

-1.307

-0.796

delta_otsA_trehalose

0.629

1.234