Top 10 genes with highest correlation to Rv1619/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2629/- | (cc=0.4767) | info on Rv2629/- |
| Rv1251c/- | (cc=0.4516) | info on Rv1251c/- |
| Rv0532/PE_PGRS6 | (cc=0.4451) | info on Rv0532/PE_PGRS6 |
| Rv1992c/ctpG | (cc=0.4375) | info on Rv1992c/ctpG |
| Rv0325/- | (cc=0.4338) | info on Rv0325/- |
| Rv3395A/- | (cc=0.4333) | info on Rv3395A/- |
| Rv3754/tyrA | (cc=0.4294) | info on Rv3754/tyrA |
| Rv3037c/- | (cc=0.4211) | info on Rv3037c/- |
| Rv1731/gabD2 | (cc=0.419) | info on Rv1731/gabD2 |
| Rv2769c/PE27 | (cc=0.4176) | info on Rv2769c/PE27 |
Correlation of Rv1619/- with Rv3754/tyrA
Normalized LFCs for Rv1619/-:
(description and provenance of datasets)
| Rv1619/- | Rv3754/tyrA | |
| Fe_supp_jason_reseq | -1.058 | 0.766 |
| low_pH_jason_reseq | -1.176 | 0.0 |
| NO_jason_reseq | -0.055 | 0.362 |
| B6_jason_reseq | 0.571 | 0.0 |
| MHCII_jason_reseq | -0.899 | 0.0 |
| Isoniazid02 | 3.339 | 2.768 |
| Rifampicin4 | 0.341 | -0.923 |
| Ethambutol3 | 0.392 | 0.175 |
| Meropenem3 | 3.656 | 2.764 |
| Vancomycin16 | 0.252 | -0.424 |
| Rv2680_day32 | -1.614 | 0.0 |
| H37Rv_KO_MarP | 0.481 | -0.272 |
| hypoxia_3wks | 0.315 | 0.0 |
| hypoxia_6wks | 0.165 | -0.549 |
| glycerol | 0.097 | -0.202 |
| cholesterol | 0.26 | 0.469 |
| AJ | 0.217 | -0.232 |
| Bibs02 | 0.587 | -0.183 |
| Bibs02c | 1.164 | 1.194 |
| BL6 | -0.582 | -0.125 |
| BL6a | 1.231 | -0.198 |
| BXD01 | -0.746 | 0.0 |
| BXD010 | 0.081 | -0.128 |
| BXD011 | -0.439 | 0.0 |
| BXD03 | -1.273 | 0.0 |
| BXD04 | -0.062 | 0.953 |
| BXD05 | 0.366 | 0.235 |
| BXD06 | -0.161 | 0.233 |
| BXD07 | -0.51 | 0.126 |
| BXD08 | -0.236 | 0.121 |
| BXD09 | -1.113 | 0.128 |
| CAST | 0.284 | 0.402 |
| CCcont | -0.355 | -0.149 |
| DS01 | 0.113 | -0.236 |
| DS02 | -0.109 | 0.199 |
| DS04 | -0.583 | -0.194 |
| DS0c | 0.534 | -0.217 |
| GP01 | 0.256 | -0.099 |
| GP02 | -0.75 | -0.083 |
| GP0c | -0.605 | -0.13 |
| NOD | -0.724 | 0.0 |
| NZO | 0.386 | -0.199 |
| PWK | 0.0 | -0.196 |
| H37Rv_KO_CtpC | -0.598 | 0.0 |
| H37Rv_KO_CtpD | -1.755 | -0.127 |
| H37Rv_KO_Rv1272 | -0.25 | -0.141 |
| H37Rv_KO_SugABC | -0.388 | 0.173 |
| H37Rv_KO_MbtN | -1.102 | -0.103 |
| Trans05 | 0.727 | -0.131 |
| macrophage_unactivated | -0.398 | -0.65 |
| IL1 | -0.531 | -0.955 |
| Rapamycin | 0.868 | -0.988 |
| Tcell | -0.16 | -0.326 |
| GMCSF | -0.401 | -0.544 |
| IFNab | -0.541 | 0.0 |
| IFNg | 0.249 | -1.195 |
| IFNg_GMCSF1 | 0.569 | -1.405 |
| Rv1432_day32 | -0.795 | 0.0 |
| Rv1565c_day32 | 0.057 | 0.0 |
| secA2_input | -0.258 | -0.412 |
| delta_Rv3594 | 0.843 | 0.34 |
| delta_Rv3717 | 0.161 | 0.279 |
| delta_Rv3811 | 0.642 | 0.171 |
| delta_Rv0954 | 0.39 | 1.512 |
| PonA1 | 0.38 | -0.304 |
| EccD1_KO | 0.352 | 0.0 |
| EspI_KO | -0.781 | 0.0 |
| PE35_KO | 0.236 | 0.368 |
| PPE68_KO | 0.0 | 0.0 |
| glycerol2 | -0.188 | 0.0 |
| lignocerate | 0.255 | 0.0 |
| oleate | 0.554 | 0.0 |
| phosphatidylcholine | 0.513 | 0.0 |
| acetate | -0.342 | 0.0 |
| glucAc | 0.895 | 0.0 |
| Rv0950ko | -0.362 | -0.582 |
| Rv1096ko | 0.492 | -1.252 |
| Rv3684ko | 0.095 | -1.772 |
| delta_otsA_trehalose | -0.468 | 0.254 |