Top 10 genes with highest correlation to Rv1571/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3902c/- | (cc=0.5757) | info on Rv3902c/- |
| Rv1023/eno | (cc=0.5614) | info on Rv1023/eno |
| Rv2507/- | (cc=0.5152) | info on Rv2507/- |
| Rv2166c/- | (cc=0.4925) | info on Rv2166c/- |
| Rv1850/ureC | (cc=0.4867) | info on Rv1850/ureC |
| Rv2266/cyp124 | (cc=0.475) | info on Rv2266/cyp124 |
| Rv2359/zur | (cc=0.4729) | info on Rv2359/zur |
| Rv2674/msrB | (cc=0.463) | info on Rv2674/msrB |
| Rv1465/- | (cc=0.4537) | info on Rv1465/- |
| Rv1135c/PPE16 | (cc=0.4424) | info on Rv1135c/PPE16 |
Correlation of Rv1571/- with Rv1135c/PPE16
Normalized LFCs for Rv1571/-:
(description and provenance of datasets)
| Rv1571/- | Rv1135c/PPE16 | |
| Fe_supp_jason_reseq | 0.923 | -0.655 |
| low_pH_jason_reseq | -1.419 | -1.094 |
| NO_jason_reseq | -2.226 | -0.551 |
| B6_jason_reseq | -0.403 | -0.13 |
| MHCII_jason_reseq | -0.829 | 0.093 |
| Isoniazid02 | -0.063 | 0.362 |
| Rifampicin4 | 1.346 | 1.075 |
| Ethambutol3 | 0.53 | 0.67 |
| Meropenem3 | 0.981 | 0.718 |
| Vancomycin16 | 0.525 | 0.846 |
| Rv2680_day32 | 0.0 | -0.104 |
| H37Rv_KO_MarP | -1.772 | -0.344 |
| hypoxia_3wks | 0.0 | -0.65 |
| hypoxia_6wks | -0.288 | -0.443 |
| glycerol | -0.202 | 0.151 |
| cholesterol | 0.659 | 0.101 |
| AJ | -0.232 | 0.402 |
| Bibs02 | -0.183 | 0.646 |
| Bibs02c | -0.209 | 0.382 |
| BL6 | -0.125 | -0.562 |
| BL6a | -0.198 | -0.37 |
| BXD01 | -0.13 | -0.218 |
| BXD010 | -0.128 | -0.642 |
| BXD011 | -0.127 | -0.181 |
| BXD03 | -0.135 | -0.455 |
| BXD04 | -0.124 | -0.192 |
| BXD05 | -0.135 | 0.289 |
| BXD06 | -0.133 | -0.469 |
| BXD07 | 0.0 | -0.111 |
| BXD08 | -0.133 | -0.267 |
| BXD09 | -0.14 | -0.472 |
| CAST | 0.581 | -0.103 |
| CCcont | 0.376 | -1.193 |
| DS01 | 1.075 | 0.26 |
| DS02 | -0.217 | 0.365 |
| DS04 | 1.495 | 0.916 |
| DS0c | -0.217 | 0.456 |
| GP01 | -0.099 | -1.134 |
| GP02 | -0.083 | 0.087 |
| GP0c | -0.13 | -0.64 |
| NOD | -0.225 | 0.202 |
| NZO | -0.199 | -0.373 |
| PWK | 0.0 | 0.429 |
| H37Rv_KO_CtpC | -0.162 | 0.187 |
| H37Rv_KO_CtpD | 0.116 | 0.473 |
| H37Rv_KO_Rv1272 | 3.081 | 0.315 |
| H37Rv_KO_SugABC | 0.09 | -0.288 |
| H37Rv_KO_MbtN | -0.103 | 0.098 |
| Trans05 | 1.796 | 0.446 |
| macrophage_unactivated | -0.83 | -0.48 |
| IL1 | 0.0 | -1.017 |
| Rapamycin | 3.591 | -0.644 |
| Tcell | 1.352 | -0.111 |
| GMCSF | -0.694 | -0.528 |
| IFNab | 0.0 | -0.91 |
| IFNg | -0.703 | -1.28 |
| IFNg_GMCSF1 | -0.826 | -0.305 |
| Rv1432_day32 | 0.0 | 0.343 |
| Rv1565c_day32 | 0.0 | 0.253 |
| secA2_input | -1.398 | -0.437 |
| delta_Rv3594 | 2.091 | 0.395 |
| delta_Rv3717 | 1.72 | 0.257 |
| delta_Rv3811 | -0.116 | 0.031 |
| delta_Rv0954 | 1.84 | 0.72 |
| PonA1 | 0.0 | 0.128 |
| EccD1_KO | 2.0 | 0.658 |
| EspI_KO | 3.73 | 0.456 |
| PE35_KO | 2.497 | 0.939 |
| PPE68_KO | 2.086 | 0.761 |
| glycerol2 | 0.0 | -0.566 |
| lignocerate | 0.462 | -0.252 |
| oleate | 0.0 | -0.313 |
| phosphatidylcholine | 0.0 | -0.115 |
| acetate | 0.0 | -0.411 |
| glucAc | 0.0 | -0.255 |
| Rv0950ko | -3.395 | -0.211 |
| Rv1096ko | -0.38 | -0.211 |
| Rv3684ko | -1.359 | -0.783 |
| delta_otsA_trehalose | 0.0 | -0.926 |