TnSeqCorr

Top 10 genes with highest correlation to Rv1513/-:

update plotcorrelationlink to info on gene
Rv0404/fadD30 (cc=0.607) info on Rv0404/fadD30
Rv0913c/- (cc=0.5375) info on Rv0913c/-
Rv3504/fadE26 (cc=0.4764) info on Rv3504/fadE26
Rv0477/- (cc=0.4679) info on Rv0477/-
Rv2892c/PPE45 (cc=0.4592) info on Rv2892c/PPE45
Rv1564c/treX (cc=0.4578) info on Rv1564c/treX
Rv0045c/- (cc=0.4543) info on Rv0045c/-
Rv3218/- (cc=0.45) info on Rv3218/-
Rv2683/- (cc=0.4426) info on Rv2683/-
Rv3378c/- (cc=0.4367) info on Rv3378c/-

Correlation of Rv1513/- with Rv0477/-

Normalized LFCs for Rv1513/-:
(description and provenance of datasets)
Rv1513/-Rv0477/-
Fe_supp_jason_reseq

1.725

0.098

low_pH_jason_reseq

-0.539

-1.051

NO_jason_reseq

1.62

-0.512

B6_jason_reseq

0.052

0.415

MHCII_jason_reseq

-0.72

0.42

Isoniazid02

-0.39

-0.506

Rifampicin4

-0.726

-0.073

Ethambutol3

-0.326

-0.427

Meropenem3

-0.531

-0.14

Vancomycin16

-0.072

-0.554

Rv2680_day32

0.881

-0.178

H37Rv_KO_MarP

1.051

0.302

hypoxia_3wks

1.061

0.267

hypoxia_6wks

-0.731

-0.125

glycerol

-0.992

-0.471

cholesterol

-0.568

0.363

AJ

0.417

-0.195

Bibs02

0.694

-0.162

Bibs02c

-1.808

0.841

BL6

-1.52

-0.034

BL6a

1.083

0.647

BXD01

0.9

0.627

BXD010

0.041

0.095

BXD011

1.169

0.711

BXD03

0.74

-0.379

BXD04

0.993

0.398

BXD05

1.324

0.071

BXD06

0.9

0.456

BXD07

1.112

0.236

BXD08

1.006

0.474

BXD09

0.822

0.305

CAST

1.26

0.035

CCcont

-0.988

-0.677

DS01

-0.419

0.236

DS02

0.449

0.383

DS04

-1.677

0.856

DS0c

-0.652

0.426

GP01

-0.138

1.27

GP02

1.734

1.634

GP0c

-0.86

0.372

NOD

-1.351

-0.802

NZO

0.845

0.993

PWK

-1.695

0.577

H37Rv_KO_CtpC

-1.53

0.751

H37Rv_KO_CtpD

1.586

0.718

H37Rv_KO_Rv1272

0.877

-0.634

H37Rv_KO_SugABC

-0.933

0.701

H37Rv_KO_MbtN

-0.183

1.493

Trans05

1.088

0.698

macrophage_unactivated

-1.474

-0.347

IL1

-1.622

-0.193

Rapamycin

-1.197

-0.479

Tcell

-0.189

-0.345

GMCSF

-0.367

0.33

IFNab

0.333

0.278

IFNg

-2.106

0.102

IFNg_GMCSF1

-1.549

0.236

Rv1432_day32

0.0

0.275

Rv1565c_day32

-1.82

-0.742

secA2_input

-1.398

0.358

delta_Rv3594

-1.741

-0.107

delta_Rv3717

-1.601

-0.133

delta_Rv3811

-2.787

-0.671

delta_Rv0954

-0.7

-0.721

PonA1

-3.817

-1.163

EccD1_KO

-1.171

0.082

EspI_KO

-0.776

0.274

PE35_KO

0.0

-0.866

PPE68_KO

-0.374

-0.49

glycerol2

-0.388

-0.017

lignocerate

-1.431

-0.809

oleate

0.352

0.768

phosphatidylcholine

-0.506

-0.51

acetate

-1.553

-1.049

glucAc

-4.028

-2.238

Rv0950ko

1.885

1.155

Rv1096ko

0.682

0.166

Rv3684ko

2.047

0.868

delta_otsA_trehalose

5.088

0.487