Top 10 genes with highest correlation to Rv1401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1638/uvrA | (cc=0.6868) | info on Rv1638/uvrA |
| Rv0003/recF | (cc=0.6291) | info on Rv0003/recF |
| Rv1633/uvrB | (cc=0.6251) | info on Rv1633/uvrB |
| Rv2737c/recA | (cc=0.6117) | info on Rv2737c/recA |
| Rv3715c/recR | (cc=0.6015) | info on Rv3715c/recR |
| Rv3201c/- | (cc=0.6008) | info on Rv3201c/- |
| Rv0949/uvrD1 | (cc=0.589) | info on Rv0949/uvrD1 |
| Rv3919c/gid | (cc=0.5855) | info on Rv3919c/gid |
| Rv2362c/recO | (cc=0.5745) | info on Rv2362c/recO |
| Rv2535c/pepQ | (cc=0.5598) | info on Rv2535c/pepQ |
Correlation of Rv1401/- with Rv3715c/recR
Normalized LFCs for Rv1401/-:
(description and provenance of datasets)
| Rv1401/- | Rv3715c/recR | |
| Fe_supp_jason_reseq | 1.253 | 2.883 |
| low_pH_jason_reseq | -0.979 | 0.0 |
| NO_jason_reseq | 0.0 | -1.993 |
| B6_jason_reseq | -0.649 | -0.413 |
| MHCII_jason_reseq | -0.437 | -0.283 |
| Isoniazid02 | -0.195 | 0.987 |
| Rifampicin4 | 0.49 | -0.357 |
| Ethambutol3 | 0.384 | 0.574 |
| Meropenem3 | -0.292 | 0.223 |
| Vancomycin16 | 0.167 | -0.976 |
| Rv2680_day32 | 0.0 | -0.642 |
| H37Rv_KO_MarP | -0.433 | -1.411 |
| hypoxia_3wks | -1.284 | -0.522 |
| hypoxia_6wks | -1.345 | -0.576 |
| glycerol | 1.204 | 1.537 |
| cholesterol | 0.492 | 0.463 |
| AJ | 0.65 | 0.324 |
| Bibs02 | -0.502 | 0.371 |
| Bibs02c | -0.365 | -0.527 |
| BL6 | 1.049 | 0.649 |
| BL6a | 0.296 | 0.0 |
| BXD01 | 1.309 | 0.79 |
| BXD010 | 0.764 | 0.722 |
| BXD011 | 0.0 | 0.0 |
| BXD03 | 0.536 | 1.448 |
| BXD04 | 0.096 | 0.395 |
| BXD05 | 1.028 | 0.502 |
| BXD06 | 1.07 | 0.566 |
| BXD07 | 1.11 | 1.445 |
| BXD08 | 1.454 | 1.351 |
| BXD09 | 0.632 | 0.285 |
| CAST | -0.632 | -0.809 |
| CCcont | 2.605 | 2.556 |
| DS01 | 0.183 | 0.171 |
| DS02 | 0.473 | -0.764 |
| DS04 | 0.29 | 0.394 |
| DS0c | -0.379 | 0.157 |
| GP01 | -0.271 | 1.484 |
| GP02 | -0.228 | 0.06 |
| GP0c | -0.108 | 0.893 |
| NOD | 0.0 | -0.566 |
| NZO | -0.348 | 1.124 |
| PWK | -0.539 | -0.494 |
| H37Rv_KO_CtpC | 0.644 | 2.019 |
| H37Rv_KO_CtpD | -0.221 | 0.537 |
| H37Rv_KO_Rv1272 | 1.542 | -0.495 |
| H37Rv_KO_SugABC | 2.384 | 1.605 |
| H37Rv_KO_MbtN | 0.614 | 0.487 |
| Trans05 | 0.718 | 0.344 |
| macrophage_unactivated | 1.25 | 0.669 |
| IL1 | -1.011 | -1.011 |
| Rapamycin | -0.491 | -0.491 |
| Tcell | 0.469 | 1.098 |
| GMCSF | -1.444 | -1.444 |
| IFNab | -0.236 | -0.236 |
| IFNg | -0.428 | -0.911 |
| IFNg_GMCSF1 | -0.503 | -0.779 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | -0.218 | -0.766 |
| secA2_input | 1.136 | 0.994 |
| delta_Rv3594 | 1.869 | 0.961 |
| delta_Rv3717 | 0.344 | 0.257 |
| delta_Rv3811 | 1.15 | 0.934 |
| delta_Rv0954 | -0.163 | 1.145 |
| PonA1 | -0.479 | 0.145 |
| EccD1_KO | 1.365 | -1.786 |
| EspI_KO | -1.144 | -2.772 |
| PE35_KO | 1.304 | -0.817 |
| PPE68_KO | 1.43 | -1.805 |
| glycerol2 | -1.597 | -2.434 |
| lignocerate | -0.762 | -2.02 |
| oleate | -1.932 | -1.961 |
| phosphatidylcholine | -1.515 | -2.027 |
| acetate | -0.161 | -0.166 |
| glucAc | 0.094 | 0.605 |
| Rv0950ko | -0.271 | -0.926 |
| Rv1096ko | 1.538 | 0.507 |
| Rv3684ko | 1.67 | 1.094 |
| delta_otsA_trehalose | 1.054 | 0.83 |