Top 10 genes with highest correlation to Rv1401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1638/uvrA | (cc=0.6868) | info on Rv1638/uvrA |
| Rv0003/recF | (cc=0.6291) | info on Rv0003/recF |
| Rv1633/uvrB | (cc=0.6251) | info on Rv1633/uvrB |
| Rv2737c/recA | (cc=0.6117) | info on Rv2737c/recA |
| Rv3715c/recR | (cc=0.6015) | info on Rv3715c/recR |
| Rv3201c/- | (cc=0.6008) | info on Rv3201c/- |
| Rv0949/uvrD1 | (cc=0.589) | info on Rv0949/uvrD1 |
| Rv3919c/gid | (cc=0.5855) | info on Rv3919c/gid |
| Rv2362c/recO | (cc=0.5745) | info on Rv2362c/recO |
| Rv2535c/pepQ | (cc=0.5598) | info on Rv2535c/pepQ |
Correlation of Rv1401/- with Rv0003/recF
Normalized LFCs for Rv1401/-:
(description and provenance of datasets)
| Rv1401/- | Rv0003/recF | |
| Fe_supp_jason_reseq | 1.253 | 2.382 |
| low_pH_jason_reseq | -0.979 | 0.0 |
| NO_jason_reseq | 0.0 | 0.281 |
| B6_jason_reseq | -0.649 | 0.333 |
| MHCII_jason_reseq | -0.437 | 0.0 |
| Isoniazid02 | -0.195 | 0.063 |
| Rifampicin4 | 0.49 | -1.086 |
| Ethambutol3 | 0.384 | -0.288 |
| Meropenem3 | -0.292 | -0.624 |
| Vancomycin16 | 0.167 | -0.913 |
| Rv2680_day32 | 0.0 | -0.554 |
| H37Rv_KO_MarP | -0.433 | -0.807 |
| hypoxia_3wks | -1.284 | -1.344 |
| hypoxia_6wks | -1.345 | -1.416 |
| glycerol | 1.204 | 1.24 |
| cholesterol | 0.492 | 1.099 |
| AJ | 0.65 | -0.168 |
| Bibs02 | -0.502 | -0.273 |
| Bibs02c | -0.365 | 0.0 |
| BL6 | 1.049 | 0.084 |
| BL6a | 0.296 | 0.696 |
| BXD01 | 1.309 | 0.322 |
| BXD010 | 0.764 | 0.0 |
| BXD011 | 0.0 | 0.383 |
| BXD03 | 0.536 | 0.475 |
| BXD04 | 0.096 | 0.305 |
| BXD05 | 1.028 | 0.176 |
| BXD06 | 1.07 | 0.469 |
| BXD07 | 1.11 | 0.796 |
| BXD08 | 1.454 | 0.174 |
| BXD09 | 0.632 | 0.494 |
| CAST | -0.632 | -0.344 |
| CCcont | 2.605 | 1.531 |
| DS01 | 0.183 | 0.159 |
| DS02 | 0.473 | 0.147 |
| DS04 | 0.29 | 0.37 |
| DS0c | -0.379 | 0.652 |
| GP01 | -0.271 | 0.68 |
| GP02 | -0.228 | -0.06 |
| GP0c | -0.108 | 1.112 |
| NOD | 0.0 | -0.163 |
| NZO | -0.348 | 0.134 |
| PWK | -0.539 | -0.142 |
| H37Rv_KO_CtpC | 0.644 | 0.401 |
| H37Rv_KO_CtpD | -0.221 | 0.778 |
| H37Rv_KO_Rv1272 | 1.542 | 0.185 |
| H37Rv_KO_SugABC | 2.384 | 1.183 |
| H37Rv_KO_MbtN | 0.614 | 0.069 |
| Trans05 | 0.718 | 0.249 |
| macrophage_unactivated | 1.25 | 0.701 |
| IL1 | -1.011 | -0.78 |
| Rapamycin | -0.491 | -0.807 |
| Tcell | 0.469 | -0.267 |
| GMCSF | -1.444 | 0.0 |
| IFNab | -0.236 | 0.877 |
| IFNg | -0.428 | 0.208 |
| IFNg_GMCSF1 | -0.503 | 0.478 |
| Rv1432_day32 | 0.0 | -1.005 |
| Rv1565c_day32 | -0.218 | -0.362 |
| secA2_input | 1.136 | -0.714 |
| delta_Rv3594 | 1.869 | 0.33 |
| delta_Rv3717 | 0.344 | -0.542 |
| delta_Rv3811 | 1.15 | 0.492 |
| delta_Rv0954 | -0.163 | 0.116 |
| PonA1 | -0.479 | -0.426 |
| EccD1_KO | 1.365 | 1.01 |
| EspI_KO | -1.144 | -0.108 |
| PE35_KO | 1.304 | 1.155 |
| PPE68_KO | 1.43 | 1.078 |
| glycerol2 | -1.597 | -2.152 |
| lignocerate | -0.762 | -2.157 |
| oleate | -1.932 | -2.178 |
| phosphatidylcholine | -1.515 | -2.053 |
| acetate | -0.161 | -0.775 |
| glucAc | 0.094 | -0.554 |
| Rv0950ko | -0.271 | 0.0 |
| Rv1096ko | 1.538 | 0.899 |
| Rv3684ko | 1.67 | 0.377 |
| delta_otsA_trehalose | 1.054 | -0.711 |