Top 10 genes with highest correlation to Rv1401/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1638/uvrA | (cc=0.6868) | info on Rv1638/uvrA |
| Rv0003/recF | (cc=0.6291) | info on Rv0003/recF |
| Rv1633/uvrB | (cc=0.6251) | info on Rv1633/uvrB |
| Rv2737c/recA | (cc=0.6117) | info on Rv2737c/recA |
| Rv3715c/recR | (cc=0.6015) | info on Rv3715c/recR |
| Rv3201c/- | (cc=0.6008) | info on Rv3201c/- |
| Rv0949/uvrD1 | (cc=0.589) | info on Rv0949/uvrD1 |
| Rv3919c/gid | (cc=0.5855) | info on Rv3919c/gid |
| Rv2362c/recO | (cc=0.5745) | info on Rv2362c/recO |
| Rv2535c/pepQ | (cc=0.5598) | info on Rv2535c/pepQ |
Correlation of Rv1401/- with Rv1633/uvrB
Normalized LFCs for Rv1401/-:
(description and provenance of datasets)
| Rv1401/- | Rv1633/uvrB | |
| Fe_supp_jason_reseq | 1.253 | 2.98 |
| low_pH_jason_reseq | -0.979 | 0.507 |
| NO_jason_reseq | 0.0 | -0.517 |
| B6_jason_reseq | -0.649 | -1.215 |
| MHCII_jason_reseq | -0.437 | -0.73 |
| Isoniazid02 | -0.195 | -0.648 |
| Rifampicin4 | 0.49 | 0.022 |
| Ethambutol3 | 0.384 | 0.067 |
| Meropenem3 | -0.292 | -0.71 |
| Vancomycin16 | 0.167 | -1.326 |
| Rv2680_day32 | 0.0 | -0.518 |
| H37Rv_KO_MarP | -0.433 | -0.563 |
| hypoxia_3wks | -1.284 | -2.743 |
| hypoxia_6wks | -1.345 | -2.575 |
| glycerol | 1.204 | 1.565 |
| cholesterol | 0.492 | 0.932 |
| AJ | 0.65 | -0.124 |
| Bibs02 | -0.502 | 0.348 |
| Bibs02c | -0.365 | 0.958 |
| BL6 | 1.049 | 1.479 |
| BL6a | 0.296 | 2.274 |
| BXD01 | 1.309 | 1.401 |
| BXD010 | 0.764 | 1.514 |
| BXD011 | 0.0 | 2.168 |
| BXD03 | 0.536 | 1.77 |
| BXD04 | 0.096 | 1.523 |
| BXD05 | 1.028 | 1.762 |
| BXD06 | 1.07 | 1.844 |
| BXD07 | 1.11 | 1.792 |
| BXD08 | 1.454 | 1.572 |
| BXD09 | 0.632 | 1.902 |
| CAST | -0.632 | -0.692 |
| CCcont | 2.605 | 3.594 |
| DS01 | 0.183 | 0.12 |
| DS02 | 0.473 | 0.318 |
| DS04 | 0.29 | 0.888 |
| DS0c | -0.379 | 0.596 |
| GP01 | -0.271 | 1.062 |
| GP02 | -0.228 | 0.159 |
| GP0c | -0.108 | 2.173 |
| NOD | 0.0 | -1.199 |
| NZO | -0.348 | -0.897 |
| PWK | -0.539 | -0.732 |
| H37Rv_KO_CtpC | 0.644 | 2.151 |
| H37Rv_KO_CtpD | -0.221 | 2.17 |
| H37Rv_KO_Rv1272 | 1.542 | 2.201 |
| H37Rv_KO_SugABC | 2.384 | 1.396 |
| H37Rv_KO_MbtN | 0.614 | 3.197 |
| Trans05 | 0.718 | 1.691 |
| macrophage_unactivated | 1.25 | 0.792 |
| IL1 | -1.011 | -0.469 |
| Rapamycin | -0.491 | 0.15 |
| Tcell | 0.469 | 0.746 |
| GMCSF | -1.444 | 0.0 |
| IFNab | -0.236 | 1.817 |
| IFNg | -0.428 | 0.067 |
| IFNg_GMCSF1 | -0.503 | -0.408 |
| Rv1432_day32 | 0.0 | -0.617 |
| Rv1565c_day32 | -0.218 | -0.706 |
| secA2_input | 1.136 | 1.027 |
| delta_Rv3594 | 1.869 | 0.829 |
| delta_Rv3717 | 0.344 | 0.982 |
| delta_Rv3811 | 1.15 | 0.671 |
| delta_Rv0954 | -0.163 | 0.178 |
| PonA1 | -0.479 | -0.372 |
| EccD1_KO | 1.365 | -0.595 |
| EspI_KO | -1.144 | -0.248 |
| PE35_KO | 1.304 | -0.114 |
| PPE68_KO | 1.43 | -0.026 |
| glycerol2 | -1.597 | -1.772 |
| lignocerate | -0.762 | -1.842 |
| oleate | -1.932 | -2.678 |
| phosphatidylcholine | -1.515 | -2.389 |
| acetate | -0.161 | -0.09 |
| glucAc | 0.094 | 0.511 |
| Rv0950ko | -0.271 | -0.383 |
| Rv1096ko | 1.538 | -0.208 |
| Rv3684ko | 1.67 | -0.295 |
| delta_otsA_trehalose | 1.054 | 0.476 |